YRC Public Data Repository - Protein Structure Prediction

Protein:	PQQD_PSESM
Organism:	Pseudomonas syringae pv. tomato
Length:	98 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PQQD_PSESM.

Description	E-value	Query Range	Subject Range
gi\|89092879, gi\|... - gi\|89092879\|ref\|ZP_01165831.1\| coenzyme PQQ synthesis protein D [Oceanospirillum sp. MED92], gi\|8908...	128.0	[0..5]	[97..1]
PQQD_PSEU2 - Coenzyme PQQ synthesis protein D OS=Pseudomonas syringae pv. syringae (strain B728a) GN=pqqD PE=3 SV...	128.0	[0..5]	[98..1]
gi\|82738185, gi\|... - gi\|82738185\|ref\|ZP_00901023.1\| coenzyme PQQ synthesis protein D [Pseudomonas putida F1], gi\|82714792...	127.0	[0..1]	[97..1]
gi\|95108660 - gi\|95108660\|emb\|CAK13354.1\| coenzyme PQQ synthesis protein D (Coenzyme PQQ synthesis protein II) [Ps... PQQD_PSEE4 - Coenzyme PQQ synthesis protein D OS=Pseudomonas entomophila (strain L48) GN=pqqD PE=3 SV=1	126.0	[0..8]	[97..1]
gi\|59891640 - gi\|59891640\|gb\|AAX10037.1\| pyrroloquinoline quinone biosynthesis protein D [Pseudomonas fluorescens]	125.0	[0..8]	[97..1]
PQQD_RAHAQ - Coenzyme PQQ synthesis protein D OS=Rahnella aquatilis GN=pqqD PE=3 SV=2	125.0	[0..8]	[97..2]
PQQD_PSEAB - Coenzyme PQQ synthesis protein D OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=pqqD PE=3 SV=1 PQQD_PSEA8 - Coenzyme PQQ synthesis protein D OS=Pseudomonas aeruginosa (strain LESB58) GN=pqqD PE=3 SV=1 PQQD_PSEAE - Coenzyme PQQ synthesis protein D OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 ... gi\|107101416 - gi\|107101416\|ref\|ZP_01365334.1\| hypothetical protein PaerPA_01002456 [Pseudomonas aeruginosa PACS2] PQQD_PSEAE - Coenzyme PQQ synthesis protein D OS=Pseudomonas aeruginosa GN=pqqD PE=3 SV=1 gi\|126167003, gi... - gi\|84321446\|ref\|ZP_00969804.1\| hypothetical protein PaerC_01000976 [Pseudomonas aeruginosa C3719], g...	124.0	[0..11]	[97..5]
PQQD1_PSEPK - Coenzyme PQQ synthesis protein D 1 OS=Pseudomonas putida (strain KT2440) GN=pqqD1 PE=3 SV=1 tr\|E4RE10\|E4RE10... - Coenzyme PQQ synthesis protein D OS=Pseudomonas putida (strain BIRD-1) GN=pqqD PE=3 SV=1	124.0	[0..8]	[97..1]
gi\|67088389, gi\|... - gi\|67154256\|ref\|ZP_00416001.1\| Coenzyme PQQ synthesis D [Azotobacter vinelandii AvOP], gi\|67088389\|g... gi\|67154256 - gi\|67154256\|ref\|ZP_00416001.1\| Coenzyme PQQ synthesis D [Azotobacter vinelandii AvOP]	124.0	[0..4]	[97..2]
PQQD_PSEA7 - Coenzyme PQQ synthesis protein D OS=Pseudomonas aeruginosa (strain PA7) GN=pqqD PE=3 SV=1	124.0	[0..11]	[97..5]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHEIKHDPA FRALTPKWHH GYRFQYEPAQ KAHVVLYPEG MIKLNDSASL IGGLIDGERT  60
   61 IAAIIAELQR EFPNIPELGM DVDDFMKVAK EKYWIDLV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	32.275724
Match:	PF05402.3
Description:	No description for PF05402.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.750	N/A	N/A	a.118.11	Cytochrome c oxidase subunit E
View	Download	0.749	N/A	N/A	a.4.6	C-terminal effector domain of the bipartite response regulators
View	Download	0.749	N/A	N/A	a.4.6	C-terminal effector domain of the bipartite response regulators
View	Download	0.729	N/A	N/A	a.118.11	Cytochrome c oxidase subunit E
View	Download	0.726	N/A	N/A	a.4.6	C-terminal effector domain of the bipartite response regulators
View	Download	0.726	N/A	N/A	a.4.6	C-terminal effector domain of the bipartite response regulators
View	Download	0.701	N/A	N/A	a.4.6	C-terminal effector domain of the bipartite response regulators
View	Download	0.701	N/A	N/A	a.4.6	C-terminal effector domain of the bipartite response regulators
View	Download	0.686	N/A	N/A	a.4.6	C-terminal effector domain of the bipartite response regulators
View	Download	0.686	N/A	N/A	a.4.6	C-terminal effector domain of the bipartite response regulators

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits