YRC Public Data Repository - Protein Structure Prediction

Protein:	PSBR_BRACM
Organism:	Brassica rapa
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSBR_BRACM.

Description	E-value	Query Range	Subject Range
PSBR_ARATH - Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1	237.0	[0..1]	[141..1]
gi\|28207611 - gi\|28207611\|gb\|AAO32060.1\| photosystem II 10kDa polypeptide [Brassica rapa subsp. pekinensis]	235.0	[0..4]	[141..1]
PSBR_TOBAC - Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1	228.0	[0..1]	[141..1]
PSBR_SOLLC - Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1	227.0	[0..3]	[141..2]
PSBR_SOLTU - Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1	226.0	[0..3]	[141..2]
gi\|83776786 - gi\|83776786\|gb\|ABC46708.1\| chloroplast photosystem II 10 kDa protein [Arachis hypogaea]	222.0	[0..12]	[141..1]
gi\|50934185, gi\|... - gi\|50934185\|ref\|XP_476620.1\| putative Photosystem II 10 kDa polypeptide, chloroplast precursor [Oryz...	207.0	[0..7]	[140..1]
gi\|33694227 - gi\|33694227\|gb\|AAQ24852.1\| 10 kDa photosystem II polypeptide [Trifolium pratense]	205.0	[0..1]	[141..1]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASVMLSSV TLKPAGFTVE KMSARGLPSL TRASPSSFRI VASGVKKIKT DKPFGVNGSM  60
   61 DLRDGVDASG RKGKGYGVYK FVDKYGANVD GYSPIYNEDE WSASGDVYKG GVTGLAIWAV 120
  121 TLAGILAGGA LLVYNTSALA Q

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	68.920819
Match:	PF04725.3
Description:	No description for PF04725.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits