YRC Public Data Repository - Protein Structure Prediction

Protein:	PSBR_SOLTU
Organism:	Solanum tuberosum
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSBR_SOLTU.

Description	E-value	Query Range	Subject Range
gi\|21491 - gi\|21491\|emb\|CAA27989.1\| unnamed protein product [Solanum tuberosum]	242.0	[0..1]	[138..1]
PSBR_SOLLC - Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1	241.0	[0..1]	[138..1]
PSBR_TOBAC - Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1	229.0	[0..1]	[138..1]
PSBR_ARATH - Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1	227.0	[0..2]	[138..3]
gi\|28207611 - gi\|28207611\|gb\|AAO32060.1\| photosystem II 10kDa polypeptide [Brassica rapa subsp. pekinensis]	227.0	[0..3]	[138..1]
gi\|967968 - gi\|967968\|gb\|AAA74957.1\| photosystem II 10kDa polypeptide PSBR_BRACM - Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1 gi\|967968\|gb\|AAA... - photosystem II 10kDa polypeptide	224.0	[0..2]	[138..3]
gi\|83776786 - gi\|83776786\|gb\|ABC46708.1\| chloroplast photosystem II 10 kDa protein [Arachis hypogaea]	220.0	[0..11]	[138..1]
gi\|50934185, gi\|... - gi\|50934185\|ref\|XP_476620.1\| putative Photosystem II 10 kDa polypeptide, chloroplast precursor [Oryz...	206.0	[0..6]	[137..1]
PSBR_SPIOL - Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1	205.0	[0..1]	[138..1]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTVMSSLS LKPTFTLEKT SVKGLPSLAR SSSSFKVVAS GVKKLKTDKP YGINGSMALR  60
   61 DGVDASGRKP KGKGVYQYVD KYGANVDGYS PIYNTDEWSP SGDVYVGGTT GLAIWAVTLV 120
  121 GILAGGALLV YNTSALAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	66.920819
Match:	PF04725.3
Description:	No description for PF04725.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits