YRC Public Data Repository - Protein Structure Prediction

Protein:	PSBR_SPIOL
Organism:	Spinacia oleracea
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSBR_SPIOL.

Description	E-value	Query Range	Subject Range
PSBR_SOLTU - Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1	230.0	[0..1]	[140..1]
PSBR_SOLLC - Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1	230.0	[0..1]	[140..1]
PSBR_TOBAC - Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1	228.0	[0..1]	[140..1]
PSBR_ARATH - Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1	228.0	[0..1]	[140..1]
gi\|28207611 - gi\|28207611\|gb\|AAO32060.1\| photosystem II 10kDa polypeptide [Brassica rapa subsp. pekinensis]	227.0	[0..3]	[140..1]
gi\|967968 - gi\|967968\|gb\|AAA74957.1\| photosystem II 10kDa polypeptide PSBR_BRACM - Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1 gi\|967968\|gb\|AAA... - photosystem II 10kDa polypeptide	226.0	[0..1]	[140..1]
gi\|83776786 - gi\|83776786\|gb\|ABC46708.1\| chloroplast photosystem II 10 kDa protein [Arachis hypogaea]	222.0	[0..11]	[140..1]
gi\|50934185, gi\|... - gi\|50934185\|ref\|XP_476620.1\| putative Photosystem II 10 kDa polypeptide, chloroplast precursor [Oryz...	213.0	[0..6]	[139..1]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSVMSSLS LKPSSFGVDT KSAVKGLPSL SRSSASFTVR ASGVKKIKVD KPLGIGGGMK  60
   61 LRDGVDSSGR KPTGKGVYQF VDKYGANVDG YSPIYNEEEW APTGDVYAGG TTGLLIWAVT 120
  121 LAGLLAGGAL LVYNTSALAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	65.337242
Match:	PF04725.3
Description:	No description for PF04725.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits