YRC Public Data Repository - Protein Structure Prediction

Protein:	PSBR_TOBAC
Organism:	Nicotiana tabacum
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSBR_TOBAC.

Description	E-value	Query Range	Subject Range
PSBR_ARATH - Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1	225.0	[0..1]	[136..1]
gi\|83776786 - gi\|83776786\|gb\|ABC46708.1\| chloroplast photosystem II 10 kDa protein [Arachis hypogaea]	225.0	[0..8]	[136..1]
PSBR_SOLTU - Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1	224.0	[0..1]	[136..1]
gi\|28207611 - gi\|28207611\|gb\|AAO32060.1\| photosystem II 10kDa polypeptide [Brassica rapa subsp. pekinensis]	224.0	[0..1]	[136..3]
PSBR_SOLLC - Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1	223.0	[0..1]	[136..1]
gi\|967968 - gi\|967968\|gb\|AAA74957.1\| photosystem II 10kDa polypeptide PSBR_BRACM - Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1 gi\|967968\|gb\|AAA... - photosystem II 10kDa polypeptide	222.0	[0..1]	[136..1]
gi\|50934185, gi\|... - gi\|50934185\|ref\|XP_476620.1\| putative Photosystem II 10 kDa polypeptide, chloroplast precursor [Oryz...	210.0	[0..1]	[135..1]
gi\|33694227 - gi\|33694227\|gb\|AAQ24852.1\| 10 kDa photosystem II polypeptide [Trifolium pratense]	202.0	[0..1]	[136..1]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTVMSLKP APFSVEKTAV KGLPSLARSS SSFRVQASGV KKLKTDKPYG INGSMSLRDG  60
   61 VDASGRKQKG KGVYQFVDKY GANVDGYSPI YNTDDWSPSG DVYVGGTTGL AIWAVTLVGI 120
  121 LAGGALLVFN TSALAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	66.455932
Match:	PF04725.3
Description:	No description for PF04725.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.229	0.092	thylakoid	a.138.1	Multiheme cytochromes
View	Download	0.214	0.023	photosystem II	a.40.1	Calponin-homology domain, CH-domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits