YRC Public Data Repository - Protein Structure Prediction

Protein:	PTEB_GEOSE
Organism:	Geobacillus stearothermophilus
Length:	100 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTEB_GEOSE.

Description	E-value	Query Range	Subject Range
PTJB_BACSU, PTCB... - Lichenan-specific phosphotransferase enzyme IIB component OS=Bacillus subtilis GN=licB PE=1 SV=1, (P... PTJB_BACSU - Lichenan-specific phosphotransferase enzyme IIB component OS=Bacillus subtilis (strain 168) GN=licB ... gi\|221321063 - gi\|221321063\|ref\|ZP_03602357.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIB compone... gi\|221325348 - gi\|221325348\|ref\|ZP_03606642.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIB compone... gi\|221316152 - gi\|221316152\|ref\|ZP_03597957.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIB compone...	147.0	[0..1]	[98..1]
gi\|89086742, gi\|... - gi\|89098497\|ref\|ZP_01171380.1\| PTS system, cellobiose-specific IIB component [Bacillus sp. NRRL B-14...	146.0	[0..1]	[99..20]
gi\|89150746, gi\|... - gi\|89201159\|ref\|ZP_01179905.1\| Phosphotransferase system, lactose/cellobiose-specific IIB subunit [B...	144.0	[0..1]	[100..1]
gi\|47553317, gi\|... - gi\|47570018\|ref\|ZP_00240680.1\| PTS system, IIB component [Bacillus cereus G9241], gi\|47569712\|ref\|ZP...	143.0	[0..1]	[99..1]
gi\|52787766, gi\|... - gi\|52787766\|ref\|YP_093595.1\| LicB [Bacillus licheniformis ATCC 14580], gi\|52350268\|gb\|AAU42902.1\| Li...	143.0	[0..1]	[99..1]
gi\|227817974, gi... - gi\|227817974\|ref\|YP_002817983.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis s... gi\|196033130, gi... - gi\|196033130\|ref\|ZP_03100543.1\| PTS system, cellobiose-specific IIB component [Bacillus cereus W], g... gi\|218539017, gi... - gi\|218906391\|ref\|YP_002454225.1\| PTS system, cellobiose-specific IIB component [Bacillus cereus AH82... gi\|172081764, gi... - gi\|177652989\|ref\|ZP_02935316.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|254735566, gi... - gi\|254737018\|ref\|ZP_05194723.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|190567812, gi... - gi\|190567812\|ref\|ZP_03020724.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis Ts... gi\|254724360 - gi\|254724360\|ref\|ZP_05186144.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|170687931, gi... - gi\|170687931\|ref\|ZP_02879144.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|254686362 - gi\|254686362\|ref\|ZP_05150221.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|170707742, gi... - gi\|170707742\|ref\|ZP_02898193.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|229599987, gi... - gi\|229599987\|ref\|YP_002869434.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis s... gi\|167635304, gi... - gi\|167635304\|ref\|ZP_02393619.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|167640483, gi... - gi\|167640483\|ref\|ZP_02398746.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|254757099 - gi\|254757099\|ref\|ZP_05209127.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|254755644 - gi\|254755644\|ref\|ZP_05207677.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|164714397, gi... - gi\|165870074\|ref\|ZP_02214731.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|254744345 - gi\|254744345\|ref\|ZP_05202025.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|30265240, gi\|... - gi\|30265240\|ref\|NP_847617.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis str. ... gi\|21397677 - ref\|NP_653662.1\| PTS_IIB, PTS system, Lactose/Cellobiose specific IIB subunit [Bacillus anthracis st... gi\|49481197, gi\|... - gi\|49481197\|ref\|YP_039205.1\| PTS system, cellobiose-specific IIB subunit [Bacillus thuringiensis ser... gi\|49181977, gi\|... - gi\|49188050\|ref\|YP_031303.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis str. ... gi\|47505911, gi\|... - gi\|47530763\|ref\|YP_022112.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis str. ...	142.0	[0..1]	[99..1]
gi\|222098672, gi... - gi\|222098672\|ref\|YP_002532730.1\| PTS system, cellobiose-specific IIB component [Bacillus cereus Q1],... gi\|75759428, gi\|... - gi\|75759428\|ref\|ZP_00739522.1\| PTS system, lichenan oligosaccharide-specific IIB component [Bacillus... gi\|217962699, gi... - gi\|217962699\|ref\|YP_002341273.1\| PTS system, cellobiose-specific IIB component [Bacillus cereus AH18... gi\|218544811, gi... - gi\|218900334\|ref\|YP_002448745.1\| PTS system, cellobiose-specific IIB component [Bacillus cereus G984... gi\|225867181, gi... - gi\|225867181\|ref\|YP_002752559.1\| PTS system, cellobiose-specific IIB component [Bacillus cereus 03BB... gi\|196045715, gi... - gi\|196045715\|ref\|ZP_03112945.1\| PTS system, cellobiose-specific IIB component [Bacillus cereus 03BB1... gi\|206744924, gi... - gi\|206976789\|ref\|ZP_03237692.1\| PTS system, cellobiose-specific IIB component [Bacillus cereus H3081...	141.0	[0..1]	[99..1]
gi\|228652801, gi... - gi\|229130462\|ref\|ZP_04259418.1\| PTS system, IIB component [Bacillus cereus BDRD-Cer4], gi\|228652801\|... gi\|229050877, gi... - gi\|229050877\|ref\|ZP_04194429.1\| PTS system, IIB component [Bacillus cereus AH676], gi\|228722533\|gb\|E... gi\|228798224, gi... - gi\|228961454\|ref\|ZP_04123066.1\| PTS system, IIB component [Bacillus thuringiensis serovar pakistani ... gi\|29898809, gi\|... - gi\|30023249\|ref\|NP_834880.1\| PTS system, lichenan oligosaccharide-specific IIB component [Bacillus c...	141.0	[0..1]	[99..1]
gi\|126701275, gi... - gi\|126701275\|ref\|YP_001090172.1\| PTS system, IIB component [Clostridium difficile 630], gi\|115252712... gi\|119633630, gi... - gi\|145952481\|ref\|ZP_01801491.1\| hypothetical protein CdifQ_04004232 [Clostridium difficile QCD-32g58... gi\|255652235 - gi\|255652235\|ref\|ZP_05399137.1\| PTS system, IIB component [Clostridium difficile QCD-37x79] gi\|255102865 - gi\|255102865\|ref\|ZP_05331842.1\| PTS system, IIB component [Clostridium difficile QCD-63q42] gi\|255308685 - gi\|255308685\|ref\|ZP_05352856.1\| PTS system, IIB component [Clostridium difficile ATCC 43255] gi\|255316392 - gi\|255316392\|ref\|ZP_05357975.1\| PTS system, IIB component [Clostridium difficile QCD-76w55] gi\|255519051 - gi\|255519051\|ref\|ZP_05386727.1\| PTS system, IIB component [Clostridium difficile QCD-97b34] gi\|254977308 - gi\|254977308\|ref\|ZP_05273780.1\| PTS system, IIB component [Clostridium difficile QCD-66c26] gi\|255094639 - gi\|255094639\|ref\|ZP_05324117.1\| PTS system, IIB component [Clostridium difficile CIP 107932]	141.0	[0..1]	[98..2]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNILLICAAG MSTSLLVTKM KEAAKQKGIE ANIWAVSADE AKSHLDQADV VLIGPQIRYK  60
   61 LAAFKKEGEA RGIPVDVINP ADYGRVNGAG VLDFALRLKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.30103
Match:	1h9cA
Description:	Enzyme IIB-cellobiose
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits