YRC Public Data Repository - Protein Structure Prediction

Protein:	PTCB_ECOLI, PTQB...
Organism:	Escherichia coli
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTCB_ECOLI, PTQB....

Description	E-value	Query Range	Subject Range
PTJB_BACSU, PTCB... - Lichenan-specific phosphotransferase enzyme IIB component OS=Bacillus subtilis GN=licB PE=1 SV=1, (P... PTJB_BACSU - Lichenan-specific phosphotransferase enzyme IIB component OS=Bacillus subtilis (strain 168) GN=licB ... gi\|221321063 - gi\|221321063\|ref\|ZP_03602357.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIB compone... gi\|221325348 - gi\|221325348\|ref\|ZP_03606642.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIB compone... gi\|221316152 - gi\|221316152\|ref\|ZP_03597957.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIB compone...	140.0	[0..4]	[99..1]
gi\|46908544, gi\|... - gi\|46908544\|ref\|YP_014933.1\| PTS system, cellobiose-specific, IIB component [Listeria monocytogenes ...	140.0	[0..4]	[101..2]
gi\|47095852, gi\|... - gi\|47095852\|ref\|ZP_00233456.1\| PTS system, cellobiose-specific, IIB component [Listeria monocytogene... gi\|127764552, gi... - gi\|153192012\|ref\|ZP_01939078.1\| PTS system, cellobiose-specific, IIB component [Listeria monocytogen... gi\|133731868, gi... - gi\|153180475\|ref\|ZP_01933518.1\| PTS system, cellobiose-specific, IIB component [Listeria monocytogen... gi\|153175605, gi... - gi\|153175605\|ref\|ZP_01930933.1\| PTS system, cellobiose-specific, IIB component [Listeria monocytogen...	138.0	[0..4]	[101..43]
gi\|89086742, gi\|... - gi\|89098497\|ref\|ZP_01171380.1\| PTS system, cellobiose-specific IIB component [Bacillus sp. NRRL B-14...	138.0	[0..2]	[104..18]
PTEB_GEOSE - Cellobiose-specific phosphotransferase enzyme IIB component OS=Geobacillus stearothermophilus GN=cel...	137.0	[0..4]	[101..1]
gi\|52787766, gi\|... - gi\|52787766\|ref\|YP_093595.1\| LicB [Bacillus licheniformis ATCC 14580], gi\|52350268\|gb\|AAU42902.1\| Li...	135.0	[0..4]	[99..1]
gi\|224500607 - gi\|224500607\|ref\|ZP_03668956.1\| hypothetical protein LmonF1_13411 [Listeria monocytogenes Finland 19... gi\|224503738 - gi\|224503738\|ref\|ZP_03672045.1\| hypothetical protein LmonFR_14764 [Listeria monocytogenes FSL R2-561... gi\|16804411 - gi\|16804411\|ref\|NP_465896.1\| hypothetical protein lmo2373 [Listeria monocytogenes EGD-e] gi\|16411861, gi\|... - pir\|\|AE1371 phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB component homolog lmo... gi\|254826366 - gi\|254826366\|ref\|ZP_05231367.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c... gi\|254829562 - gi\|254829562\|ref\|ZP_05234249.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c... gi\|226224923, gi... - gi\|226224923\|ref\|YP_002759030.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB ... gi\|254901165 - gi\|254901165\|ref\|ZP_05261089.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c... gi\|254914048 - gi\|254914048\|ref\|ZP_05264060.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c... gi\|254854476 - gi\|254854476\|ref\|ZP_05243824.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c... gi\|254880423 - gi\|254880423\|ref\|ZP_05253133.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c... gi\|254992401 - gi\|254992401\|ref\|ZP_05274591.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c... gi\|255521508 - gi\|255521508\|ref\|ZP_05388745.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c... gi\|254933430 - gi\|254933430\|ref\|ZP_05266789.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c... gi\|254938363 - gi\|254938363\|ref\|ZP_05270060.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c...	135.0	[0..4]	[101..2]
gi\|227817974, gi... - gi\|227817974\|ref\|YP_002817983.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis s... gi\|196033130, gi... - gi\|196033130\|ref\|ZP_03100543.1\| PTS system, cellobiose-specific IIB component [Bacillus cereus W], g... gi\|218539017, gi... - gi\|218906391\|ref\|YP_002454225.1\| PTS system, cellobiose-specific IIB component [Bacillus cereus AH82... gi\|172081764, gi... - gi\|177652989\|ref\|ZP_02935316.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|254735566, gi... - gi\|254737018\|ref\|ZP_05194723.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|190567812, gi... - gi\|190567812\|ref\|ZP_03020724.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis Ts... gi\|254724360 - gi\|254724360\|ref\|ZP_05186144.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|170687931, gi... - gi\|170687931\|ref\|ZP_02879144.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|254686362 - gi\|254686362\|ref\|ZP_05150221.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|170707742, gi... - gi\|170707742\|ref\|ZP_02898193.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|229599987, gi... - gi\|229599987\|ref\|YP_002869434.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis s... gi\|167635304, gi... - gi\|167635304\|ref\|ZP_02393619.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|167640483, gi... - gi\|167640483\|ref\|ZP_02398746.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|254757099 - gi\|254757099\|ref\|ZP_05209127.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|254755644 - gi\|254755644\|ref\|ZP_05207677.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|164714397, gi... - gi\|165870074\|ref\|ZP_02214731.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|254744345 - gi\|254744345\|ref\|ZP_05202025.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis st... gi\|30265240, gi\|... - gi\|30265240\|ref\|NP_847617.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis str. ... gi\|21397677 - ref\|NP_653662.1\| PTS_IIB, PTS system, Lactose/Cellobiose specific IIB subunit [Bacillus anthracis st... gi\|49481197, gi\|... - gi\|49481197\|ref\|YP_039205.1\| PTS system, cellobiose-specific IIB subunit [Bacillus thuringiensis ser... gi\|49181977, gi\|... - gi\|49188050\|ref\|YP_031303.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis str. ... gi\|47505911, gi\|... - gi\|47530763\|ref\|YP_022112.1\| PTS system, cellobiose-specific IIB component [Bacillus anthracis str. ...	135.0	[0..4]	[99..1]
gi\|29343058, gi\|... - gi\|29375597\|ref\|NP_814751.1\| PTS system, IIB component [Enterococcus faecalis V583], gi\|29343058\|gb\|... gi\|229305979, gi... - gi\|229548958\|ref\|ZP_04437683.1\| protein-N(pi)-phosphohistidine--sugar phosphotransferase [Enterococc... gi\|238831372, gi... - gi\|238855992\|ref\|ZP_04646274.1\| lichenan-specific phosphotransferase enzyme iib component [Enterococ...	134.0	[0..1]	[104..1]
gi\|229351162, gi... - gi\|229511197\|ref\|ZP_04400676.1\| PTS system cellobiose-specific IIB component [Vibrio cholerae B33], ... gi\|197751953, gi... - gi\|254286620\|ref\|ZP_04961576.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae AM-19... gi\|153819913, gi... - gi\|153819913\|ref\|ZP_01972580.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae NCTC ... gi\|149739622, gi... - gi\|153826610\|ref\|ZP_01979277.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae MZO-2... gi\|227013198, gi... - gi\|227117748\|ref\|YP_002819644.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae O395... gi\|229608151, gi... - gi\|229608151\|ref\|YP_002878799.1\| PTS system cellobiose-specific IIB component [Vibrio cholerae MJ-12... gi\|229521394, gi... - gi\|229521394\|ref\|ZP_04410813.1\| PTS system cellobiose-specific IIB component [Vibrio cholerae TM 110... gi\|121586554, gi... - gi\|121586554\|ref\|ZP_01676340.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae 2740-... gi\|153212248, gi... - gi\|153212248\|ref\|ZP_01948036.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae 1587]... gi\|121728832, gi... - gi\|121728832\|ref\|ZP_01681843.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae V52],... gi\|153801322, gi... - gi\|153801322\|ref\|ZP_01955908.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae MZO-3... gi\|229518316, gi... - gi\|229518316\|ref\|ZP_04407760.1\| PTS system cellobiose-specific IIB component [Vibrio cholerae RC9], ... gi\|9655767, gi\|1... - gi\|9655767\|gb\|AAF94440.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae O1 biovar E... gi\|153222947, gi... - gi\|153222947\|ref\|ZP_01953554.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae MAK 7... gi\|229347426, gi... - gi\|229515657\|ref\|ZP_04405116.1\| PTS system cellobiose-specific IIB component [Vibrio cholerae TMA 21... gi\|11280254 - pir\|\|D82219 PTS system, cellobiose-specific IIB component VC1281 [imported] - Vibrio cholerae (strai... gi\|125620828, gi... - gi\|254226659\|ref\|ZP_04920238.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae V51],... gi\|229505132, gi... - gi\|229505132\|ref\|ZP_04394642.1\| PTS system cellobiose-specific IIB component [Vibrio cholerae BX 330... gi\|254844110, gi... - gi\|254848405\|ref\|ZP_05237755.1\| PTS system protein [Vibrio cholerae MO10], gi\|254844110\|gb\|EET22524.... gi\|227009341, gi... - gi\|227081453\|ref\|YP_002810004.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae M66-...	134.0	[0..4]	[101..2]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKKHIYLFC SAGMSTSLLV SKMRAQAEKY EVPVIIEAFP ETLAGEKGQN ADVVLLGPQI  60
   61 AYMLPEIQRL LPNKPVEVID SLLYGKVDGL GVLKAAVAAI KKAAAN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.09691
Match:	1h9cA
Description:	Enzyme IIB-cellobiose
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein-N(PI)-phosphohistidine-sugar phosphotransferase activity	5.08041453921791	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	4.49138214292642	bayes_pls_golite062009
glucoside transmembrane transporter activity	1.83892097143526	bayes_pls_golite062009
sugar transmembrane transporter activity	1.77053981674308	bayes_pls_golite062009
transporter activity	1.6837050020547	bayes_pls_golite062009
transmembrane transporter activity	1.5685227361887	bayes_pls_golite062009
substrate-specific transporter activity	1.32293422112884	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.217268678967	bayes_pls_golite062009
active transmembrane transporter activity	1.12964417923438	bayes_pls_golite062009
monosaccharide transmembrane transporter activity	0.71593290802554	bayes_pls_golite062009
catalytic activity	0.676259875978821	bayes_pls_golite062009
beta-glucoside transmembrane transporter activity	0.50967675887857	bayes_pls_golite062009
binding	0.472595683811139	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.37663629577414	bayes_pls_golite062009
fructose transmembrane transporter activity	0.225562559709031	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.0296784994545702	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: