YRC Public Data Repository - Protein Structure Prediction

Protein:	PYYA_DANRE
Organism:	Danio rerio
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PYYA_DANRE.

Description	E-value	Query Range	Subject Range
NPY_XENLA - Pro-neuropeptide Y OS=Xenopus laevis GN=npy PE=3 SV=1	153.0	[0..1]	[97..1]
NPY_TYPNA - Pro-neuropeptide Y OS=Typhlonectes natans GN=npy PE=1 SV=1	153.0	[0..1]	[97..1]
gi\|112419089, gi... - gi\|134024445\|gb\|AAI35388.1\| Neuropeptide Y [Xenopus tropicalis], gi\|118405076\|ref\|NP_001072530.1\| ne...	153.0	[0..1]	[97..1]
NPY_CHICK - Pro-neuropeptide Y OS=Gallus gallus GN=NPY PE=3 SV=1	153.0	[0..1]	[97..1]
NPY_MOUSE - Pro-neuropeptide Y OS=Mus musculus GN=Npy PE=1 SV=2	151.0	[0..1]	[97..1]
NPY_RAT - Pro-neuropeptide Y OS=Rattus norvegicus GN=Npy PE=1 SV=1	150.0	[0..1]	[97..2]
gi\|73976504 - gi\|73976504\|ref\|XP_532492.2\| PREDICTED: similar to Neuropeptide Y precursor [Canis familiaris]	149.0	[0..1]	[97..1]
gi\|124000283, gi... - gi\|124000283\|gb\|ABM87650.1\| neuropeptide Y [synthetic construct], gi\|123993319\|gb\|ABM84261.1\| neurop... HGNC:7955\|MIM:16... - Y NPY - neuropeptide Y	148.0	[0..1]	[97..1]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVMLKPWTV VATVLICVLL CLGTFVDAYP PKPENPGDDA APEELAKYYT ALRHYINLIT  60
   61 RQRYGKRSTS EDVMAELLFG DDTEHKQRSR YDDSFMW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.554	a.64.1	Saposin
View	Download	0.326	a.24.3	Cytochromes
View	Download	0.410	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.354	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View	Download	0.346	a.46.1	Methionine synthase domain

Predicted functions:

Term	Confidence	Notes
binding	1.33626508331649	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: