| Protein: | RD21A_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 462 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RD21A_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
524.0 | [0..1] | [462..1] |
|
Region A: Residues: [1-354] |
1 11 21 31 41 51
| | | | | |
1 MGFLKPTMAI LFLAMVAVSS AVDMSIISYD EKHGVSTTGG RSEAEVMSIY EAWLVKHGKA 60
61 QSQNSLVEKD RRFEIFKDNL RFVDEHNEKN LSYRLGLTRF ADLTNDEYRS KYLGAKMEKK 120
121 GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD 180
181 LITLSEQELV DCDTSYNEGC NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA 240
241 KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV 300
301 AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKN
|
| Detection Method: |  |
| Confidence: | 74.69897 |
| Match: | 1pciA |
| Description: | Caricain (protease omega) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| peptidase activity | 4.90619850296986 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 4.64381885397949 | bayes_pls_golite062009 |
| endopeptidase activity | 3.75054525912786 | bayes_pls_golite062009 |
| hydrolase activity | 3.74079711298952 | bayes_pls_golite062009 |
| cysteine-type peptidase activity | 2.71117522993364 | bayes_pls_golite062009 |
| cysteine-type endopeptidase activity | 1.95802900199539 | bayes_pls_golite062009 |
| binding | 1.29265216891074 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.12653729823589 | bayes_pls_golite062009 |
| catalytic activity | 1.05972260874031 | bayes_pls_golite062009 |
| protein binding | 0.774177093888744 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 0.649171767629235 | bayes_pls_golite062009 |
| thiolester hydrolase activity | 0.59115205419466 | bayes_pls_golite062009 |
| kininogen binding | 0.41283715939055 | bayes_pls_golite062009 |
| signal transducer activity | 0.12644030784065 | bayes_pls_golite062009 |
| molecular transducer activity | 0.12644030784065 | bayes_pls_golite062009 |
| structural molecule activity | 0.102555314244558 | bayes_pls_golite062009 |
| tubulin binding | 0.0482209771629902 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 0.0101379718864654 | bayes_pls_golite062009 |
| microtubule binding | 0.00635493133568055 | bayes_pls_golite062009 |
|
Region A: Residues: [355-462] |
1 11 21 31 41 51
| | | | | |
1 GENPPNPGPS PPSPIKPPTQ CDSYYTCPES NTCCCLFEYG KYCFAWGCCP LEAATCCDDN 60
61 YSCCPHEYPV CDLDQGTCLL SKNSPFSVKA LKRKPATPFW SQGRKNIA
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
