YRC Public Data Repository - Protein Structure Prediction

Protein:	RELB_ECOLI
Organism:	Escherichia coli
Length:	79 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RELB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|77628951, gi\|... - gi\|77628951\|ref\|ZP_00791537.1\| COG3077: DNA-damage-inducible protein J [Yersinia pseudotuberculosis ...	97.0	[0..1]	[79..1]
gi\|71725271, gi\|... - gi\|71725271\|ref\|YP_272311.1\| DNA-damage-inducible protein [Pseudomonas syringae pv. phaseolicola 144...	92.0	[0..2]	[79..15]
gi\|113948504, gi... - gi\|160873056\|ref\|YP_001557062.1\| bifunctional antitoxin/transcriptional repressor RelB [Shewanella b... gi\|217500745, gi... - gi\|217980313\|ref\|YP_002364289.1\| bifunctional antitoxin/transcriptional repressor RelB [Shewanella b... gi\|152998496, gi... - gi\|152998496\|ref\|YP_001355417.1\| bifunctional antitoxin/transcriptional repressor RelB [Shewanella b...	92.0	[0..1]	[79..1]
gi\|95112591 - gi\|95112591\|emb\|CAK17319.1\| putative RelB protein (antitoxin) [Pseudomonas entomophila L48] gi\|104783604, gi... - gi\|95112591\|emb\|CAK17319.1\| putative RelB protein (antitoxin) [Pseudomonas entomophila L48], gi\|1047...	91.0	[0..1]	[79..1]
gi\|19070020, gi\|... - gi\|19352353\|ref\|NP_598111.1\| damage inducible-like protein [uncultured bacterium], gi\|19070020\|emb\|C...	91.0	[0..4]	[79..7]
gi\|213970804, gi... - gi\|213970804\|ref\|ZP_03398928.1\| bifunctional antitoxin/transcriptional repressor RelB [Pseudomonas s... gi\|28872496, gi\|... - gi\|28872496\|ref\|NP_795115.1\| bifunctional antitoxin/transcriptional repressor RelB [Pseudomonas syri... gi\|71736587, gi\|... - gi\|71736587\|ref\|YP_272467.1\| bifunctional antitoxin/transcriptional repressor RelB [Pseudomonas syri... tr\|Q87UB7\|Q87UB7... - Stability cassette protein, putative OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_538... tr\|F3GJN9\|F3GJN9... - Bifunctional antitoxin/transcriptional repressor RelB OS=Pseudomonas syringae pv. pisi str. 1704B GN...	89.0	[0..1]	[79..1]
gi\|194709385, gi... - gi\|194733883\|ref\|YP_002112899.1\| hypothetical protein SeSA_B0017 [Salmonella enterica subsp. enteric... gi\|161087374, gi... - gi\|161867995\|ref\|YP_001598176.1\| bifunctional antitoxin/transcriptional repressor RelB [Salmonella e... gi\|60115671, gi\|... - gi\|60115671\|ref\|YP_209462.1\| bifunctional antitoxin/transcriptional repressor RelB [Salmonella enter...	89.0	[0..1]	[79..1]
gi\|36784718, gi\|... - gi\|37525291\|ref\|NP_928635.1\| DNA-damage-inducible protein J [Photorhabdus luminescens subsp. laumond...	89.0	[0..1]	[79..1]
gi\|148546450, gi... - gi\|82739006\|ref\|ZP_00901824.1\| stability cassette protein, putative [Pseudomonas putida F1], gi\|8271...	88.0	[0..1]	[79..1]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSINLRIDD ELKARSYAAL EKMGVTPSEA LRLMLEYIAD NERLPFKQTL LSDEDAELVE  60
   61 IVKERLRNPK PVRVTLDEL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	37.657577
Match:	PF04221.3
Description:	No description for PF04221.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits