YRC Public Data Repository - Protein Structure Prediction

Protein:	RL10_OCEIH
Organism:	Oceanobacillus iheyensis
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL10_OCEIH.

Description	E-value	Query Range	Subject Range
gi\|229329198, gi... - gi\|229499919\|ref\|ZP_04393596.1\| ribosomal protein L10 [Geobacillus sp. Y412MC52], gi\|229329198\|gb\|EE... gi\|220706737, gi... - gi\|221089311\|ref\|ZP_03558831.1\| ribosomal protein L10 [Geobacillus sp. Y412MC61], gi\|220706737\|gb\|EE... RL10_GEOKA - 50S ribosomal protein L10 OS=Geobacillus kaustophilus (strain HTA426) GN=rplJ PE=3 SV=1 RL10_GEOKA - 50S ribosomal protein L10 OS=Geobacillus kaustophilus GN=rplJ PE=3 SV=1	182.0	[0..1]	[166..1]
gi\|52078598, gi\|... - gi\|52078598\|ref\|YP_077389.1\| 50S ribosomal protein L10 [Bacillus licheniformis ATCC 14580], gi\|52001...	178.0	[0..1]	[166..9]
RL10_STAAS - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain MSSA476) GN=rplJ PE=3 SV=1	177.0	[0..1]	[165..1]
gi\|49183133, gi\|... - gi\|49183133\|ref\|YP_026385.1\| 50S ribosomal protein L10 [Bacillus anthracis str. Sterne], gi\|49177060... gi\|228634924, gi... - gi\|229148508\|ref\|ZP_04276764.1\| 50S ribosomal protein L10 [Bacillus cereus m1550], gi\|228634924\|gb\|E... RL10_BACHK - 50S ribosomal protein L10 OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=rplJ PE=3 SV=... gi\|228629558, gi... - gi\|229153877\|ref\|ZP_04282007.1\| 50S ribosomal protein L10 [Bacillus cereus ATCC 4342], gi\|228629558\|... RL10_BACC1 - 50S ribosomal protein L10 OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=rplJ PE=3 SV=1 gi\|229136945, gi... - gi\|229136945\|ref\|ZP_04265572.1\| 50S ribosomal protein L10 [Bacillus cereus BDRD-ST26], gi\|228646483\|... gi\|47525354, gi\|... - gi\|47525354\|ref\|YP_016703.1\| 50S ribosomal protein L10 [Bacillus anthracis str. 'Ames Ancestor'], gi... gi\|229142905, gi... - gi\|229142905\|ref\|ZP_04271346.1\| 50S ribosomal protein L10 [Bacillus cereus BDRD-ST24], gi\|228640526\|... gi\|228595058, gi... - gi\|229188384\|ref\|ZP_04315432.1\| 50S ribosomal protein L10 [Bacillus cereus ATCC 10876], gi\|228595058... gi\|30260290, gi\|... - gi\|30260290\|ref\|NP_842667.1\| 50S ribosomal protein L10 [Bacillus anthracis str. Ames], gi\|30253611\|g... RL10_BACAN - 50S ribosomal protein L10 OS=Bacillus anthracis GN=rplJ PE=3 SV=1 gi\|229194489, gi... - gi\|229194489\|ref\|ZP_04321292.1\| 50S ribosomal protein L10 [Bacillus cereus m1293], gi\|228588955\|gb\|E... RL10_BACHK - 50S ribosomal protein L10 OS=Bacillus thuringiensis subsp. konkukian GN=rplJ PE=3 SV=1 gi\|228606742, gi... - gi\|229176699\|ref\|ZP_04304103.1\| 50S ribosomal protein L10 [Bacillus cereus 172560W], gi\|228606742\|gb... gi\|228600948, gi... - gi\|229182493\|ref\|ZP_04309744.1\| 50S ribosomal protein L10 [Bacillus cereus BGSC 6E1], gi\|228600948\|g... gi\|254733746 - gi\|254733746\|ref\|ZP_05191461.1\| 50S ribosomal protein L10 [Bacillus anthracis str. Western North Ame... gi\|254739415 - gi\|254739415\|ref\|ZP_05197115.1\| 50S ribosomal protein L10 [Bacillus anthracis str. Kruger B] RL10_BACAA - 50S ribosomal protein L10 OS=Bacillus anthracis (strain A0248) GN=rplJ PE=3 SV=1 gi\|254684397 - gi\|254684397\|ref\|ZP_05148257.1\| 50S ribosomal protein L10 [Bacillus anthracis str. CNEVA-9066] RL10_BACCZ - 50S ribosomal protein L10 OS=Bacillus cereus (strain ZK / E33L) GN=rplJ PE=3 SV=1 gi\|254751212 - gi\|254751212\|ref\|ZP_05203250.1\| 50S ribosomal protein L10 [Bacillus anthracis str. Vollum] gi\|254756811 - gi\|254756811\|ref\|ZP_05208839.1\| 50S ribosomal protein L10 [Bacillus anthracis str. Australia 94] RL10_BACC4 - 50S ribosomal protein L10 OS=Bacillus cereus (strain B4264) GN=rplJ PE=3 SV=1 gi\|228912838, gi... - gi\|228912838\|ref\|ZP_04076485.1\| 50S ribosomal protein L10 [Bacillus thuringiensis serovar pulsiensis... RL10_BACC7 - 50S ribosomal protein L10 OS=Bacillus cereus (strain AH187) GN=rplJ PE=3 SV=1 gi\|228919049, gi... - gi\|228919049\|ref\|ZP_04082428.1\| 50S ribosomal protein L10 [Bacillus thuringiensis serovar huazhongen... RL10_BACCQ - 50S ribosomal protein L10 OS=Bacillus cereus (strain Q1) GN=rplJ PE=3 SV=1 RL10_BACC3 - 50S ribosomal protein L10 OS=Bacillus cereus (strain 03BB102) GN=rplJ PE=3 SV=1 RL10_BACC0 - 50S ribosomal protein L10 OS=Bacillus cereus (strain AH820) GN=rplJ PE=3 SV=1 RL10_BACAC - 50S ribosomal protein L10 OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rplJ PE=3 SV=1 gi\|228815738, gi... - gi\|228943905\|ref\|ZP_04106290.1\| 50S ribosomal protein L10 [Bacillus thuringiensis serovar monterrey ... gi\|228950647, gi... - gi\|228950647\|ref\|ZP_04112781.1\| 50S ribosomal protein L10 [Bacillus thuringiensis serovar kurstaki s... gi\|206732822, gi... - gi\|206972248\|ref\|ZP_03233195.1\| 50S ribosomal protein L10 [Bacillus cereus AH1134], gi\|206732822\|gb\|... gi\|228834274, gi... - gi\|228925352\|ref\|ZP_04088448.1\| 50S ribosomal protein L10 [Bacillus thuringiensis serovar pondicheri... gi\|167636700, gi... - gi\|167636700\|ref\|ZP_02394987.1\| ribosomal protein L10 [Bacillus anthracis str. A0442], gi\|167527874\|... gi\|228931601, gi... - gi\|228931601\|ref\|ZP_04094507.1\| 50S ribosomal protein L10 [Bacillus thuringiensis serovar andalousie... gi\|228727301, gi... - gi\|229041004\|ref\|ZP_04189767.1\| 50S ribosomal protein L10 [Bacillus cereus AH676], gi\|228727301\|gb\|E... gi\|228715223, gi... - gi\|229067864\|ref\|ZP_04201181.1\| 50S ribosomal protein L10 [Bacillus cereus F65185], gi\|228715223\|gb\|... gi\|228956540, gi... - gi\|228956540\|ref\|ZP_04118336.1\| 50S ribosomal protein L10 [Bacillus thuringiensis serovar pakistani ... gi\|228776344, gi... - gi\|228983354\|ref\|ZP_04143567.1\| 50S ribosomal protein L10 [Bacillus thuringiensis serovar tochigiens... gi\|228675634, gi... - gi\|229107785\|ref\|ZP_04237421.1\| 50S ribosomal protein L10 [Bacillus cereus Rock1-15], gi\|228675634\|g... gi\|229119761, gi... - gi\|229119761\|ref\|ZP_04249022.1\| 50S ribosomal protein L10 [Bacillus cereus 95/8201], gi\|228663662\|gb... gi\|229077396, gi... - gi\|229077396\|ref\|ZP_04210054.1\| 50S ribosomal protein L10 [Bacillus cereus Rock4-2], gi\|228705915\|gb... gi\|229089230, gi... - gi\|229089230\|ref\|ZP_04220511.1\| 50S ribosomal protein L10 [Bacillus cereus Rock3-42], gi\|228694069\|g...	177.0	[0..1]	[166..1]
RL10_STAAN - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain N315) GN=rplJ PE=1 SV=1 RL10_STAAW - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain MW2) GN=rplJ PE=3 SV=1 RL10_STAAM - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rplJ PE=3 SV=1 RL10_STAA2 - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain JH1) GN=rplJ PE=3 SV=1 RL10_STAA9 - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain JH9) GN=rplJ PE=3 SV=1 gi\|227557413, gi... - gi\|227557413\|ref\|ZP_03987460.1\| 50S ribosomal protein L10 [Staphylococcus aureus subsp. aureus MN8],... gi\|227852233, gi... - gi\|227899470\|ref\|ZP_04017275.1\| 50S ribosomal protein L10 [Staphylococcus aureus subsp. aureus TCH60... RL10_STAAT - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rplJ PE=3 SV=1 gi\|251802990, gi... - gi\|251813488\|ref\|ZP_04827961.1\| 50S ribosomal protein L10 [Staphylococcus aureus subsp. aureus TCH70... RL10_STAAC - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain COL) GN=rplJ PE=3 SV=1 gi\|253315649 - gi\|253315649\|ref\|ZP_04838862.1\| 50S ribosomal protein L10 [Staphylococcus aureus subsp. aureus str. ... gi\|253731144, gi... - gi\|253731144\|ref\|ZP_04865309.1\| 50S ribosomal protein L10 [Staphylococcus aureus subsp. aureus USA30... gi\|253729476, gi... - gi\|253732547\|ref\|ZP_04866712.1\| 50S ribosomal protein L10 [Staphylococcus aureus subsp. aureus TCH13... gi\|255005333 - gi\|255005333\|ref\|ZP_05143934.2\| 50S ribosomal protein L10 [Staphylococcus aureus subsp. aureus Mu50-... gi\|269202162\|ref... - 50S ribosomal protein L10 [Staphylococcus aureus subsp. aureus ED98] RL10_STAA8 - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain NCTC 8325) GN=rplJ PE=3 SV=1 RL10_STAA3 - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain USA300) GN=rplJ PE=3 SV=1 RL10_STAAB - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rplJ PE=3 SV=1 RL10_STAAR - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain MRSA252) GN=rplJ PE=3 SV=1 gi\|87126714\|gb\|A... - ribosomal protein L10 [Staphylococcus aureus subsp. aureus USA300], ribosomal protein L10 [Staphyloc... gi\|221139612 - gi\|221139612\|ref\|ZP_03564411.1\| 50S ribosomal protein L10 [Staphylococcus aureus subsp. aureus str. ... gi\|25295127 - pir\|\|E89821 50S ribosomal protein L10 [imported] - Staphylococcus aureus (strain N315) gi\|221141024 - gi\|221141024\|ref\|ZP_03565517.1\| 50S ribosomal protein L10 [Staphylococcus aureus subsp. aureus str. ... RL10_STAA1 - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rplJ PE=3 SV=1 RL10_STAAE - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain Newman) GN=rplJ PE=3 SV=1	177.0	[0..1]	[165..1]
RL10_BACCR - 50S ribosomal protein L10 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / N... gi\|229125616, gi... - gi\|229125616\|ref\|ZP_04254648.1\| 50S ribosomal protein L10 [Bacillus cereus BDRD-Cer4], gi\|228657808\|...	176.0	[0..1]	[166..1]
RL10_BACSK - 50S ribosomal protein L10 OS=Bacillus clausii (strain KSM-K16) GN=rplJ PE=3 SV=1	176.0	[0..1]	[166..1]
gi\|228751630, gi... - gi\|229009608\|ref\|ZP_04166834.1\| 50S ribosomal protein L10 [Bacillus mycoides DSM 2048], gi\|228751630... gi\|228652319, gi... - gi\|229131106\|ref\|ZP_04260018.1\| 50S ribosomal protein L10 [Bacillus cereus BDRD-ST196], gi\|228652319... gi\|228721363, gi... - gi\|229053945\|ref\|ZP_04195379.1\| 50S ribosomal protein L10 [Bacillus cereus AH603], gi\|228721363\|gb\|E... gi\|229165087, gi... - gi\|229165087\|ref\|ZP_04292882.1\| 50S ribosomal protein L10 [Bacillus cereus AH621], gi\|228618350\|gb\|E... RL10_BACWK - 50S ribosomal protein L10 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplJ PE=3 SV=1	176.0	[0..1]	[166..1]
RL10_BACC2 - 50S ribosomal protein L10 OS=Bacillus cereus (strain G9842) GN=rplJ PE=3 SV=1 gi\|74488556, gi\|... - gi\|75763954\|ref\|ZP_00743582.1\| LSU ribosomal protein L10P [Bacillus thuringiensis serovar israelensi... gi\|228898852, gi... - gi\|228898852\|ref\|ZP_04063134.1\| 50S ribosomal protein L10 [Bacillus thuringiensis IBL 4222], gi\|2288... gi\|228796457, gi... - gi\|228963199\|ref\|ZP_04124368.1\| 50S ribosomal protein L10 [Bacillus thuringiensis serovar sotto str.... gi\|228905896, gi... - gi\|228905896\|ref\|ZP_04069793.1\| 50S ribosomal protein L10 [Bacillus thuringiensis IBL 200], gi\|22885...	176.0	[0..1]	[166..1]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGIIEKKKQ VVEEIAEKFR ASQTAVVVDY RGLDVAEVTA LRKELREAGI EFKVYKNTMT  60
   61 RRAVEAVELT DLNDTLTGPT AIAFSNDDVV APARILNNFK KDHEALEIKG GVIEGQVATL 120
  121 DQIKDLADLP NYEGMVSMLL SVLQAPVRNF AYVTKAVAEQ KEEQGA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.0
Match:	1zavA
Description:	Ribosomal Protein L10-L12(NTD) Complex, Space Group P21
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.21399440705185	bayes_pls_golite062009
structural molecule activity	8.64272477066313	bayes_pls_golite062009
binding	0.883379158418688	bayes_pls_golite062009
protein binding	0.184314459922274	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: