YRC Public Data Repository - Protein Structure Prediction

Protein:	RL16_SYNY3
Organism:	Synechocystis sp. PCC 6803
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL16_SYNY3.

Description	E-value	Query Range	Subject Range
RL16_PROM4 - 50S ribosomal protein L16 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplP PE=3 SV=1	190.0	[0..1]	[132..1]
gi\|67923590, gi\|... - gi\|67923590\|ref\|ZP_00517062.1\| Ribosomal protein L16 [Crocosphaera watsonii WH 8501], gi\|67854560\|gb...	190.0	[0..1]	[139..1]
RL16_SYNJB - 50S ribosomal protein L16 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=rplP PE=3 SV=1 gi\|86610035 - gi\|86610035\|ref\|YP_478797.1\| ribosomal protein L16 [Cyanobacteria bacterium Yellowstone B-Prime]	189.0	[0..1]	[137..1]
RL16_SYNJA - 50S ribosomal protein L16 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplP PE=3 SV=1 gi\|86605859 - gi\|86605859\|ref\|YP_474622.1\| ribosomal protein L16 [Cyanobacteria bacterium Yellowstone A-Prime]	189.0	[0..1]	[134..1]
RL16_THETN - 50S ribosomal protein L16 OS=Thermoanaerobacter tengcongensis GN=rplP PE=3 SV=1 RL16_CALS4 - 50S ribosomal protein L16 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / ...	188.0	[0..1]	[136..1]
RL16_THEPX - 50S ribosomal protein L16 OS=Thermoanaerobacter sp. (strain X514) GN=rplP PE=3 SV=1 gi\|242257808, gi... - gi\|242257808\|ref\|ZP_04802658.1\| ribosomal protein L16 [Thermoanaerobacter sp. X513], gi\|242230652\|gb...	187.0	[0..1]	[136..1]
RL16_CHLSY - 50S ribosomal protein L16 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rp... gi\|53799602 - ref\|ZP_00359487.1\| COG0197: Ribosomal protein L16/L10E [Chloroflexus aurantiacus] RL16_CHLAA - 50S ribosomal protein L16 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rpl...	187.0	[0..1]	[137..1]
RL16_CLOTH - 50S ribosomal protein L16 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / ... gi\|196253851, gi... - gi\|196253851\|ref\|ZP_03152456.1\| ribosomal protein L16 [Clostridium thermocellum DSM 4150], gi\|196196...	187.0	[0..1]	[137..1]
RL16_THEP3 - 50S ribosomal protein L16 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplP P... gi\|241883317, gi... - gi\|241904334\|ref\|ZP_04789036.1\| ribosomal protein L16 [Thermoanaerobacter brockii subsp. finnii Ako-...	187.0	[0..1]	[136..1]
RL16_THEEB - 50S ribosomal protein L16 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplP PE=3 SV=1 RL16_SYNEL - 50S ribosomal protein L16 OS=Synechococcus elongatus GN=rplP PE=3 SV=1	187.0	[0..1]	[137..1]

Back

Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSPRRTKFR KQQRGRMRGL AERGSTLNFG DYALQATEPC WITSRQIEAA RRAMTRYIRR  60
   61 GGKIWIRIFP DKPVTMRPAE TRMGSGKGSP EYWVAVVKPG RVMFELAGVS EEVAREAMRL 120
  121 AAQKLPIKTK FISRQEDYI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.0
Match:	1njmK
Description:	50S subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.80692012906383	bayes_pls_golite062009
structural molecule activity	9.22985932721781	bayes_pls_golite062009
peptidyltransferase activity	3.65229345531491	bayes_pls_golite062009
transferase activity, transferring amino-acyl groups	0.205796305154945	bayes_pls_golite062009
catalytic activity	0.145440139643068	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: