YRC Public Data Repository - Protein Structure Prediction

Protein:	RL18_HALMA
Organism:	Haloarcula marismortui
Length:	186 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL18_HALMA.

Description	E-value	Query Range	Subject Range
RL5_CHICK - 60S ribosomal protein L5 OS=Gallus gallus GN=RPL5 PE=2 SV=2	221.0	[0..1]	[185..11]
gi\|44966788 - gi\|44966788\|gb\|AAS49559.1\| ribosomal protein L5 [Latimeria chalumnae]	221.0	[0..1]	[185..1]
RL18_HALSA - 50S ribosomal protein L18 OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpl... RL18_HALS3 - 50S ribosomal protein L18 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl18 PE=... RL18_HALSA - 50S ribosomal protein L18P OS=Halobacterium salinarium GN=rpl18p PE=1 SV=3	219.0	[0..1]	[182..2]
gi\|112907480 - gi\|112907480\|gb\|ABI26260.1\| ribosomal protein L5 [Dicentrarchus labrax]	218.0	[0..1]	[185..11]
gi\|40642990 - gi\|40642990\|emb\|CAD91421.1\| ribosomal protein L5 [Crassostrea gigas]	218.0	[0..1]	[183..11]
gi\|114557920 - gi\|114557920\|ref\|XP_513564.2\| PREDICTED: similar to MSTP030 [Pan troglodytes]	218.0	[0..1]	[184..120]
gi\|15293871 - gi\|15293871\|gb\|AAK95128.1\|AF401556_1 ribosomal protein L5a [Ictalurus punctatus]	217.0	[0..1]	[185..11]
gi\|50344868, gi\|... - gi\|50344868\|ref\|NP_001002106.1\| ribosomal protein L5 [Danio rerio], gi\|49902965\|gb\|AAH76208.1\| Ribos...	217.0	[0..1]	[185..11]
gi\|148230833, gi... - gi\|27503217\|gb\|AAH42258.1\| Rpl5-b protein [Xenopus laevis], gi\|148230833\|ref\|NP_001079437.1\| similar...	217.0	[0..1]	[185..11]
RL18_HALMA - 50S ribosomal protein L18P OS=Haloarcula marismortui GN=rpl18p PE=1 SV=3 RL18_HALMA - 50S ribosomal protein L18 OS=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B...	216.0	[0..1]	[186..2]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATGPRYKVPM RRRREARTDY HQRLRLLKSG KPRLVARKSN KHVRAQLVTL GPNGDDTLAS  60
   61 AHSSDLAEYG WEAPTGNMPS AYLTGLLAGL RAQEAGVEEA VLDIGLNSPT PGSKVFAIQE 120
  121 GAIDAGLDIP HNDDVLADWQ RTRGAHIAEY DEQLEEPLYS GDFDAADLPE HFDELRETLL 180
  181 DGDIEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.69897
Match:	1s72N
Description:	REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits