YRC Public Data Repository - Protein Structure Prediction

Protein:	RLA1_CHICK
Organism:	Gallus gallus
Length:	114 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLA1_CHICK.

Description	E-value	Query Range	Subject Range
gi\|10177851, gi\|... - gi\|67633816\|gb\|AAY78832.1\| putative 60S acidic ribosomal protein P1 [Arabidopsis thaliana], gi\|15238...	127.0	[0..3]	[114..2]
gi\|38086394, gi\|... - gi\|94408796\|ref\|XP_993025.1\| PREDICTED: similar to 60S acidic ribosomal protein P1 isoform 2 [Mus mu...	125.0	[0..1]	[114..1]
gi\|11141354 - gi\|11141354\|emb\|CAC16109.1\| acidic ribosomal protein 1 [Rana esculenta]	120.0	[0..1]	[114..1]
gi\|114654113, gi... - gi\|114654113\|ref\|XP_001163471.1\| PREDICTED: similar to ribosomal protein P1 isoform 2 [Pan troglodyt...	117.0	[0..1]	[114..1]
gi\|109084446 - gi\|109084446\|ref\|XP_001095290.1\| PREDICTED: similar to 60S acidic ribosomal protein P1 [Macaca mulat...	113.0	[0..2]	[114..137]
gi\|109081701 - gi\|109081701\|ref\|XP_001087245.1\| PREDICTED: similar to 60S acidic ribosomal protein P1 isoform 2 [Ma... gi\|57108305, gi\|... - gi\|74000657\|ref\|XP_866711.1\| PREDICTED: similar to 60S acidic ribosomal protein P1 isoform 4 [Canis ... RLA1_BOVIN - 60S acidic ribosomal protein P1 OS=Bos taurus GN=RPLP1 PE=3 SV=1 gi\|114683743, gi... - gi\|55642341\|ref\|XP_510509.1\| PREDICTED: similar to 60S acidic ribosomal protein P1 isoform 3 [Pan tr... CCDS10233.1_1 - null RPLP1 - ribosomal protein, large, P1	113.0	[0..1]	[114..1]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVSELACI YSALILHDDE VTVTEDKINA LIKAAGVNVE PFWPGLFAKA LANIDIGSLI  60
   61 CNVGAGGGAP AAAAPAGGAA PAGGGAAPAE EKKEEEKKEE SEESDDDMGF GLFD

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.03
Match:	1jj2G
Description:	Ribosomal protein L10
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits