YRC Public Data Repository - Protein Structure Prediction

Protein:	RNPA_VIBVU
Organism:	Vibrio vulnificus
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNPA_VIBVU.

Description	E-value	Query Range	Subject Range
RNPA_SODGM - Ribonuclease P protein component OS=Sodalis glossinidius (strain morsitans) GN=rnpA PE=3 SV=1	130.0	[0..1]	[117..1]
RNPA_PECAS - Ribonuclease P protein component OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN... RNPA_ERWCT - Ribonuclease P protein component OS=Erwinia carotovora subsp. atroseptica GN=rnpA PE=3 SV=1	123.0	[0..1]	[117..1]
gi\|91228354, gi\|... - gi\|91228354\|ref\|ZP_01262282.1\| ribonuclease P [Vibrio alginolyticus 12G01], gi\|91188114\|gb\|EAS74418....	123.0	[0..1]	[118..1]
gi\|121591468, gi... - gi\|121591468\|ref\|ZP_01678741.1\| ribonuclease P protein component [Vibrio cholerae 2740-80], gi\|12154... gi\|254291133, gi... - gi\|254291133\|ref\|ZP_04961930.1\| ribonuclease P protein component [Vibrio cholerae AM-19226], gi\|1977... gi\|153819846, gi... - gi\|153819846\|ref\|ZP_01972513.1\| ribonuclease P protein component [Vibrio cholerae NCTC 8457], gi\|126... gi\|229354144, gi... - gi\|229508869\|ref\|ZP_04398360.1\| ribonuclease P protein component [Vibrio cholerae B33], gi\|229354144... RNPA_VIBC3 - Ribonuclease P protein component OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa... RNPA_VIBCM - Ribonuclease P protein component OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rnpA PE=3 SV=1 gi\|254847276, gi... - gi\|75828670\|ref\|ZP_00758028.1\| COG0594: RNase P protein component [Vibrio cholerae MO10], gi\|2548515... gi\|229508292, gi... - gi\|229508292\|ref\|ZP_04397796.1\| ribonuclease P protein component [Vibrio cholerae BX 330286], gi\|229... gi\|125620550, gi... - gi\|75817870\|ref\|ZP_00748134.1\| COG0594: RNase P protein component [Vibrio cholerae V51], gi\|25422694... gi\|229347054, gi... - gi\|229515954\|ref\|ZP_04405411.1\| ribonuclease P protein component [Vibrio cholerae TMA 21], gi\|229347... gi\|116217466, gi... - gi\|75824159\|ref\|ZP_00753623.1\| COG0594: RNase P protein component [Vibrio cholerae RC385], gi\|116217... gi\|229517140, gi... - gi\|229517140\|ref\|ZP_04406586.1\| ribonuclease P protein component [Vibrio cholerae RC9], gi\|229346203... gi\|229342773, gi... - gi\|229520179\|ref\|ZP_04409606.1\| ribonuclease P protein component [Vibrio cholerae TM 11079-80], gi\|2... gi\|229524908, gi... - gi\|229524908\|ref\|ZP_04414313.1\| ribonuclease P protein component [Vibrio cholerae bv. albensis VL426... gi\|153830820, gi... - gi\|153830820\|ref\|ZP_01983487.1\| ribonuclease P protein component [Vibrio cholerae 623-39], gi\|148873... gi\|229530207, gi... - gi\|229530207\|ref\|ZP_04419596.1\| ribonuclease P protein component [Vibrio cholerae 12129(1)], gi\|2293... gi\|229606566, gi... - gi\|229606566\|ref\|YP_002877214.1\| ribonuclease P protein component [Vibrio cholerae MJ-1236], gi\|2293... RNPA_VIBCH - Ribonuclease P protein component OS=Vibrio cholerae GN=rnpA PE=3 SV=1 RNPA_VIBCH - Ribonuclease P protein component OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N1...	122.0	[0..1]	[118..1]
RNPA_PHOLL - Ribonuclease P protein component OS=Photorhabdus luminescens subsp. laumondii GN=rnpA PE=3 SV=1 RNPA_PHOLL - Ribonuclease P protein component OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CI...	122.0	[0..1]	[118..1]
gi\|124547751, gi... - gi\|124547751\|ref\|ZP_01706597.1\| ribonuclease P protein component [Shewanella putrefaciens 200], gi\|1... RNPA_SHEPC - Ribonuclease P protein component OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rnpA PE... RNPA_SHESW - Ribonuclease P protein component OS=Shewanella sp. (strain W3-18-1) GN=rnpA PE=3 SV=1	122.0	[0..1]	[118..1]
RNPA_YERPA - Ribonuclease P protein component OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rnpA PE=3 SV=1 RNPA_YERPN - Ribonuclease P protein component OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rnpA PE=3 SV=1 RNPA_YERP3 - Ribonuclease P protein component OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=r... gi\|89101594 - gi\|89101594\|ref\|ZP_01174320.1\| COG0594: RNase P protein component [Yersinia pestis biovar Orientalis... RNPA_YERPS - Ribonuclease P protein component OS=Yersinia pseudotuberculosis GN=rnpA PE=3 SV=1 gi\|150260965, gi... - gi\|150260965\|ref\|ZP_01917693.1\| ribonuclease P protein [Yersinia pestis CA88-4125], gi\|149290373\|gb\|... gi\|229839807, gi... - gi\|229839807\|ref\|ZP_04459966.1\| protein C5 component of RNase P [Yersinia pestis biovar Orientalis s... RNPA_YERPE - Ribonuclease P protein component OS=Yersinia pestis GN=rnpA PE=3 SV=1 RNPA_YERPP - Ribonuclease P protein component OS=Yersinia pestis (strain Pestoides F) GN=rnpA PE=3 SV=1 gi\|229841892, gi... - gi\|229841892\|ref\|ZP_04462048.1\| protein C5 component of RNase P [Yersinia pestis biovar Orientalis s... gi\|229896769, gi... - gi\|229896769\|ref\|ZP_04511932.1\| protein C5 component of RNase P [Yersinia pestis Pestoides A], gi\|22... gi\|21961129, gi\|... - gi\|22127983\|ref\|NP_671406.1\| ribonuclease P [Yersinia pestis KIM], gi\|21961129\|gb\|AAM87657.1\|AE01401... RNPA_YERPS - Ribonuclease P protein component OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=rnpA ... gi\|45443731, gi\|... - gi\|45443731\|ref\|NP_995270.1\| ribonuclease P [Yersinia pestis biovar Microtus str. 91001], gi\|4543860... gi\|15981990, gi\|... - gi\|218931077\|ref\|YP_002348952.1\| ribonuclease P [Yersinia pestis CO92], gi\|16124209\|ref\|NP_407522.1\|...	122.0	[0..1]	[118..1]
RNPA_PSYIN - Ribonuclease P protein component OS=Psychromonas ingrahamii (strain 37) GN=rnpA PE=3 SV=1	122.0	[0..1]	[118..1]
gi\|90325207, gi\|... - gi\|90413738\|ref\|ZP_01221726.1\| ribonuclease P [Photobacterium profundum 3TCK], gi\|90325207\|gb\|EAS417...	122.0	[0..1]	[118..1]
RNPA_SHEFN - Ribonuclease P protein component OS=Shewanella frigidimarina (strain NCIMB 400) GN=rnpA PE=3 SV=1	122.0	[0..1]	[118..1]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTYAFNREL RLLTPEHYQN VFQQAHRAGS PHFTIIARNN NLSHPRLGLA VPKKQIKTAV  60
   61 GRNRFKRLAR ESFRNTQHQL PNKDFVVIAK KSAQDLSNEE LFKLFDKLWH RLSRPSRG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.69897
Match:	1a6fA
Description:	RNASE P PROTEIN FROM BACILLUS SUBTILIS
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits