YRC Public Data Repository - Protein Structure Prediction

Protein:	RS10_GLOVI
Organism:	Gloeobacter violaceus
Length:	104 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS10_GLOVI.

Description	E-value	Query Range	Subject Range
gi\|48871257 - gi\|48871257\|ref\|ZP_00323973.1\| COG0051: Ribosomal protein S10 [Pediococcus pentosaceus ATCC 25745]	154.0	[0..2]	[104..40]
gi\|83312230, gi\|... - gi\|83312230\|ref\|YP_422494.1\| Ribosomal protein S10 [Magnetospirillum magneticum AMB-1], gi\|82947071\|...	152.0	[0..3]	[104..24]
gi\|52426104, gi\|... - gi\|52426104\|ref\|YP_089241.1\| 30S ribosomal protein S10 [Mannheimia succiniciproducens MBEL55E], gi\|5...	147.0	[0..3]	[104..20]
RS10_RHOPB - 30S ribosomal protein S10 OS=Rhodopseudomonas palustris (strain BisB18) GN=rpsJ PE=3 SV=1	147.0	[0..3]	[104..1]
RS10_DESRM - 30S ribosomal protein S10 OS=Desulfotomaculum reducens (strain MI-1) GN=rpsJ PE=3 SV=1	147.0	[0..3]	[104..1]
RS10_MOOTA - 30S ribosomal protein S10 OS=Moorella thermoacetica (strain ATCC 39073) GN=rpsJ PE=3 SV=1	147.0	[0..3]	[104..1]
RS10_PELTS - 30S ribosomal protein S10 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=...	147.0	[0..3]	[104..1]
gi\|90417764, gi\|... - gi\|90417764\|ref\|ZP_01225676.1\| ribosomal protein S10 [Aurantimonas sp. SI85-9A1], gi\|90337436\|gb\|EAS... gi\|90417764, gi\|... - gi\|90417764\|ref\|ZP_01225676.1\| ribosomal protein S10 [Aurantimonas sp. SI85-9A1], gi\|90337436\|gb\|EAS...	147.0	[0..3]	[104..1]
RS10_RALSO - 30S ribosomal protein S10 OS=Ralstonia solanacearum (strain GMI1000) GN=rpsJ PE=3 SV=1 gi\|83748148, gi\|... - gi\|83748148\|ref\|ZP_00945175.1\| SSU ribosomal protein S10P [Ralstonia solanacearum UW551], gi\|8372511... RS10_RALSO - 30S ribosomal protein S10 OS=Ralstonia solanacearum GN=rpsJ PE=3 SV=1	146.0	[0..2]	[104..1]
RS10_ANASK - 30S ribosomal protein S10 OS=Anaeromyxobacter sp. (strain K) GN=rpsJ PE=3 SV=1 RS10_ANAD2 - 30S ribosomal protein S10 OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=rpsJ PE=... RS10_ANADE - 30S ribosomal protein S10 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=rpsJ PE=3 SV=1 RS10_ANADF - 30S ribosomal protein S10 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=rpsJ PE=3 SV=1	146.0	[0..3]	[103..1]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALTQQKIRI RLQAFDHGLL DQSCSKIVDT ANRTNAAAVG PIPLPTRIRR YCVLRSPHVD  60
   61 KDSREHFETR THRRIIDIYQ PSAKTIDALM RLDLPAGVDI EVKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.69897
Match:	1p6gJ
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.82905885280588	bayes_pls_golite062009
structural molecule activity	9.25405593567362	bayes_pls_golite062009
binding	0.795193544824207	bayes_pls_golite062009
RNA binding	0.60427462690745	bayes_pls_golite062009
nucleic acid binding	0.513619902565835	bayes_pls_golite062009
protein binding	0.180450584965049	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: