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View Structure Prediction Details

Protein: RS11_NITEU
Organism: Nitrosomonas europaea
Length: 129 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS11_NITEU.

Description E-value Query
Range
Subject
Range
RS11_BARQU - 30S ribosomal protein S11 OS=Bartonella quintana (strain Toulouse) GN=rpsK PE=3 SV=1
RS11_BARQU - 30S ribosomal protein S11 OS=Bartonella quintana GN=rpsK PE=3 SV=1
190.0 [0..1] [129..1]

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Predicted Domain #1
Region A:
Residues: [1-129]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKPSLKIRK KVKKNVVEGV AHIHASFNNT IVTISDRQGN ALSWATSGGV GFKGSRKSTP  60
   61 FAAQVAAEHA GRAALEYGVK NLEVRVKGPG PGRDSAVRAL NATGFKITSI TDVTPIPHNG 120
  121 CRPPKKRRI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.522879
Match: 1vs5K
Description: No description for 1vs5K was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.83351366956976 bayes_pls_golite062009
structural molecule activity 9.25292687983044 bayes_pls_golite062009
RNA binding 1.52264031918826 bayes_pls_golite062009
nucleic acid binding 0.983215686081669 bayes_pls_golite062009
binding 0.558121720172199 bayes_pls_golite062009
rRNA binding 0.357032493028 bayes_pls_golite062009
catalytic activity 0.249767694451989 bayes_pls_golite062009
translation regulator activity 0.17520676474539 bayes_pls_golite062009
protein binding 0.013467373576568 bayes_pls_golite062009

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