YRC Public Data Repository - Protein Structure Prediction

Protein:	RS13_AGRFC
Organism:	Agrobacterium tumefaciens str. C58
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS13_AGRFC.

Description	E-value	Query Range	Subject Range
gi\|25294726 - gi\|25294726\|pir\|\|E97591 structure homolog of thermus thermophilus 30S ribosomal chain M [imported] -... gi\|15157045, gi\|... - gi\|15889220\|ref\|NP_354901.1\| 30S ribosomal protein S13 [Agrobacterium tumefaciens str. C58], gi\|1515...	172.0	[0..2]	[122..35]
RS13_ROSDO - 30S ribosomal protein S13 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rpsM PE=3 SV...	170.0	[0..1]	[122..1]
gi\|84499818, gi\|... - gi\|84499818\|ref\|ZP_00998106.1\| 30S ribosomal protein S13 [Oceanicola batsensis HTCC2597], gi\|8439296...	170.0	[0..1]	[122..1]
gi\|241904316, gi... - gi\|241904316\|ref\|ZP_04789018.1\| ribosomal protein S13 [Thermoanaerobacter brockii subsp. finnii Ako-... RS13_THEP3 - 30S ribosomal protein S13 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rpsM P... gi\|255113485, gi... - gi\|255254961\|ref\|ZP_05334490.1\| ribosomal protein S13 [Thermoanaerobacter italicus Ab9], gi\|25511348... gi\|242230670, gi... - gi\|242257826\|ref\|ZP_04802676.1\| ribosomal protein S13 [Thermoanaerobacter sp. X513], gi\|242230670\|gb... gi\|255339273, gi... - gi\|255339273\|ref\|ZP_05380110.1\| ribosomal protein S13 [Thermoanaerobacter mathranii subsp. mathranii... RS13_THEPX - 30S ribosomal protein S13 OS=Thermoanaerobacter sp. (strain X514) GN=rpsM PE=3 SV=1	169.0	[0..1]	[122..1]
gi\|114550931, gi... - gi\|114778800\|ref\|ZP_01453607.1\| 30S ribosomal protein S13 [Mariprofundus ferrooxydans PV-1], gi\|1145...	169.0	[0..1]	[122..1]
gi\|114540634, gi... - gi\|114767224\|ref\|ZP_01446089.1\| 30S ribosomal protein S13 [Roseovarius sp. HTCC2601], gi\|114540634\|g...	169.0	[0..1]	[122..1]
RS13_SYMTH - 30S ribosomal protein S13 OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=rpsM PE=3 SV=1 RS13_SYMTH - 30S ribosomal protein S13 OS=Symbiobacterium thermophilum GN=rpsM PE=3 SV=1	169.0	[0..1]	[122..1]
RS13_THETN - 30S ribosomal protein S13 OS=Thermoanaerobacter tengcongensis GN=rpsM PE=3 SV=1 RS13_CALS4 - 30S ribosomal protein S13 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / ...	169.0	[0..1]	[122..1]
RS13_RUEPO - 30S ribosomal protein S13 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=rpsM PE=3... RS13_SILPO - 30S ribosomal protein S13 OS=Silicibacter pomeroyi GN=rpsM PE=3 SV=1	168.0	[0..1]	[122..1]
gi\|83847293, gi\|... - gi\|83941473\|ref\|ZP_00953935.1\| 30S ribosomal protein S13 [Sulfitobacter sp. EE-36], gi\|83847293\|gb\|E...	168.0	[0..1]	[122..1]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARIAGVNIP TAKRVVIALT YIHGIGPKFA QEIMDKVGIP AEKRVHQLTD AEVLQIREAI  60
   61 DRDYQVEGDL RRETSMNIKR LMDLGCYRGL RHRRGLPVRG QRTHTNARTR KGPAKAIAGK 120
  121 KK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.0
Match:	2uu9M
Description:	No description for 2uu9M was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits