YRC Public Data Repository - Protein Structure Prediction

Protein:	RS18_BACHD
Organism:	Bacillus halodurans
Length:	77 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS18_BACHD.

Description	E-value	Query Range	Subject Range
RS18_BACSK - 30S ribosomal protein S18 OS=Bacillus clausii (strain KSM-K16) GN=rpsR PE=3 SV=1	110.0	[0..1]	[77..1]
RS18_PSYA2 - 30S ribosomal protein S18 OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=rpsR PE=3 SV=1 RS18_PSYCK - 30S ribosomal protein S18 OS=Psychrobacter cryohalolentis (strain K5) GN=rpsR PE=3 SV=1	110.0	[0..1]	[76..1]
RS18_PSYWF - 30S ribosomal protein S18 OS=Psychrobacter sp. (strain PRwf-1) GN=rpsR PE=3 SV=1	110.0	[0..1]	[76..1]
RS18_KORVE - 30S ribosomal protein S18 OS=Koribacter versatilis (strain Ellin345) GN=rpsR PE=3 SV=1	109.0	[0..4]	[72..51]
sp\|A0LAG7\|RS18_MAGMM - 30S ribosomal protein S18 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) GN=rpsR... RS18_MAGMM - 30S ribosomal protein S18 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) GN=rpsR...	108.0	[0..2]	[75..33]
RS18_BACCN - 30S ribosomal protein S18 OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-...	108.0	[0..3]	[75..5]
RS18_NITEU - 30S ribosomal protein S18 OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN=rpsR PE=3 SV=... RS18_NITEU - 30S ribosomal protein S18 OS=Nitrosomonas europaea GN=rpsR PE=3 SV=2	108.0	[0..1]	[76..1]
RS18_GLUOX - 30S ribosomal protein S18 OS=Gluconobacter oxydans (strain 621H) GN=rpsR PE=3 SV=1 RS18_GLUOX - 30S ribosomal protein S18 OS=Gluconobacter oxydans GN=rpsR PE=3 SV=1	106.0	[0..2]	[75..23]
gi\|228271886, gi... - gi\|228474191\|ref\|ZP_04058928.1\| ribosomal protein S18 [Staphylococcus hominis SK119], gi\|228271886\|g... RS18_STAHJ - 30S ribosomal protein S18 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpsR PE=3 SV=1	106.0	[0..10]	[77..13]
gi\|223479392, gi... - gi\|254427140\|ref\|ZP_05040847.1\| ribosomal protein S18 [Alcanivorax sp. DG881], gi\|223479392\|ref\|YP_0... RS18_ALCBS - 30S ribosomal protein S18 OS=Alcanivorax borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB 13689 /...	106.0	[0..1]	[77..1]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARRGRPKRR KVCYFTVNKI EKIDYKDVDL LKKFVSERGK ILPRRVTGTS AKYQRQLTTA  60
   61 IKRARQIALL PYVTDNN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.69897
Match:	1vs5R
Description:	No description for 1vs5R was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	3.74194835757561	bayes_pls_golite062009
structural molecule activity	3.45591847600399	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: