YRC Public Data Repository - Protein Structure Prediction

Protein:	RS18_LACLA
Organism:	Lactococcus lactis subsp. lactis
Length:	81 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS18_LACLA.

Description	E-value	Query Range	Subject Range
RS18_PSYWF - 30S ribosomal protein S18 OS=Psychrobacter sp. (strain PRwf-1) GN=rpsR PE=3 SV=1	115.0	[0..8]	[80..3]
RS18_PSYA2 - 30S ribosomal protein S18 OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=rpsR PE=3 SV=1 RS18_PSYCK - 30S ribosomal protein S18 OS=Psychrobacter cryohalolentis (strain K5) GN=rpsR PE=3 SV=1	115.0	[0..8]	[80..3]
RS18_STRPG - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=rpsR PE=3 SV=1 RS18_STRPB - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=rpsR PE=3 SV=1 RS18_STRPC - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=rpsR PE=3 SV=1 RS18_STRPF - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=rpsR PE=3 SV=1 RS18_STRPM - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M28 GN=rpsR PE=3 SV=1 gi\|15675656, gi\|... - gi\|15675656\|ref\|NP_269830.1\| 30S ribosomal protein S18 [Streptococcus pyogenes M1 GAS], gi\|13622868\|... RS18_STRS7 - 30S ribosomal protein S18 OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=rpsR PE=3 SV=1 RS18_STRP1 - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M1 GN=rpsR PE=3 SV=1 RS18_STRPM - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M28 (strain MGAS6180) GN=rpsR PE=3 SV=1 RS18_STRE4 - 30S ribosomal protein S18 OS=Streptococcus equi subsp. equi (strain 4047) GN=rpsR PE=3 SV=1 RS18_STRP3 - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M3 GN=rpsR PE=3 SV=1 gi\|242391905, gi... - gi\|251783273\|ref\|YP_002997578.1\| 30S ribosomal protein S18 [Streptococcus dysgalactiae subsp. equisi... RS18_STRP6 - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M6 GN=rpsR PE=3 SV=1 RS18_STRP8 - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M18 GN=rpsR PE=3 SV=1 gi\|225869195, gi... - gi\|225869195\|ref\|YP_002745143.1\| 30S ribosomal protein S18 [Streptococcus equi subsp. zooepidemicus]... RS18_STRPQ - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=rpsR PE=3 SV=1 RS18_STRP6 - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN... RS18_STREM - 30S ribosomal protein S18 OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=rpsR PE=3... RS18_STRU0 - 30S ribosomal protein S18 OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=rpsR PE=3 SV=1 RS18_STRPD - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=rpsR PE=3 SV=1 RS18_STRP3 - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=r... RS18_STRP8 - 30S ribosomal protein S18 OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=rpsR PE=3 SV=1 RS18_STRPY - (P66475) 30S ribosomal protein S18 gi\|71911366, gi\|... - gi\|71911366\|ref\|YP_282916.1\| 30S ribosomal protein S18 [Streptococcus pyogenes MGAS5005], gi\|7185414...	114.0	[0..1]	[79..1]
gi\|55737709, gi\|... - gb\|AAV63270.1\| 30S ribosomal protein S18 [Streptococcus thermophilus CNRZ1066], gb\|AAV61351.1\| 30S ... RS18_STRT2 - 30S ribosomal protein S18 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rpsR PE... RS18_STRTD - 30S ribosomal protein S18 OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rpsR PE=3 S... RS18_STRT1 - 30S ribosomal protein S18 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rpsR PE=3 SV=1	113.0	[0..1]	[79..1]
RS18_STRA3 - 30S ribosomal protein S18 OS=Streptococcus agalactiae serotype III (strain NEM316) GN=rpsR PE=3 SV=1 RS18_STRA5 - 30S ribosomal protein S18 OS=Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R) GN... RS18_STRA1 - 30S ribosomal protein S18 OS=Streptococcus agalactiae serotype Ia (strain ATCC 27591 / A909 / CDC SS... gi\|77174410, gi\|... - gi\|77406986\|ref\|ZP_00784002.1\| ribosomal protein S18 [Streptococcus agalactiae H36B], gi\|77174410\|gb... gi\|76585685, gi\|... - gi\|76798964\|ref\|ZP_00781165.1\| ribosomal protein S18 [Streptococcus agalactiae 18RS21], gi\|76585685\|... RS18_STRA3 - 30S ribosomal protein S18 OS=Streptococcus agalactiae serotype III GN=rpsR PE=3 SV=1 gi\|77161309, gi\|... - gi\|77412637\|ref\|ZP_00788913.1\| ribosomal protein S18 [Streptococcus agalactiae CJB111], gi\|77161309\|... RS18_STRA5 - 30S ribosomal protein S18 OS=Streptococcus agalactiae serotype V GN=rpsR PE=3 SV=1 gi\|77410339, gi\|... - gi\|77410339\|ref\|ZP_00786755.1\| ribosomal protein S18 [Streptococcus agalactiae COH1], gi\|77171052\|gb... gi\|228251166, gi... - gi\|228477147\|ref\|ZP_04061785.1\| ribosomal protein S18 [Streptococcus salivarius SK126], gi\|228251166... RS18_STRA1 - 30S ribosomal protein S18 OS=Streptococcus agalactiae serotype Ia GN=rpsR PE=3 SV=1	113.0	[0..1]	[79..1]
gi\|148988585, gi... - gi\|148988585\|ref\|ZP_01820018.1\| hypothetical protein CGSSp6BS73_08674 [Streptococcus pneumoniae SP6-... RS18_STRPI - 30S ribosomal protein S18 OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=rpsR PE=3 SV=1 gi\|147922909, gi... - gi\|148984887\|ref\|ZP_01818140.1\| hypothetical protein CGSSp3BS71_09631 [Streptococcus pneumoniae SP3-... gi\|171779262, gi... - gi\|171779262\|ref\|ZP_02920233.1\| hypothetical protein STRINF_01110 [Streptococcus infantarius subsp. ... RS18_STRPS - 30S ribosomal protein S18 OS=Streptococcus pneumoniae (strain CGSP14) GN=rpsR PE=3 SV=1 RS18_STRMU - 30S ribosomal protein S18 OS=Streptococcus mutans GN=rpsR PE=3 SV=1 RS18_STRPJ - 30S ribosomal protein S18 OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=rpsR PE=... gi\|168488799, gi... - gi\|183572611\|gb\|EDT93139.1\| ribosomal protein S18 [Streptococcus pneumoniae SP195], gi\|168488799\|ref... gi\|168491569, gi... - gi\|183574282\|gb\|EDT94810.1\| ribosomal protein S18 [Streptococcus pneumoniae CDC0288-04], gi\|16849156... gi\|183576411, gi... - gi\|183576411\|gb\|EDT96939.1\| ribosomal protein S18 [Streptococcus pneumoniae CDC3059-06], gi\|16849344... gi\|183578889, gi... - gi\|183578889\|gb\|EDT99417.1\| ribosomal protein S18 [Streptococcus pneumoniae MLV-016], gi\|168575265\|r... RS18_STRGC - 30S ribosomal protein S18 OS=Streptococcus gordonii (strain Challis / ATCC 35105 / BCRC 15272 / CH1 ... gi\|149021813, gi... - gi\|149021813\|ref\|ZP_01835820.1\| hypothetical protein CGSSp23BS72_09623 [Streptococcus pneumoniae SP2... RS18_STRGC - 30S ribosomal protein S18 OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288)... gi\|168484972, gi... - gi\|172041899\|gb\|EDT49945.1\| ribosomal protein S18 [Streptococcus pneumoniae CDC1873-00], gi\|16848497... gi\|149011777, gi... - gi\|149011777\|ref\|ZP_01832973.1\| hypothetical protein CGSSp19BS75_07412 [Streptococcus pneumoniae SP1... gi\|183569672, gi... - gi\|183569672\|gb\|EDT90200.1\| ribosomal protein S18 [Streptococcus pneumoniae CDC1087-00], gi\|16848750... gi\|149007548, gi... - gi\|149007548\|ref\|ZP_01831183.1\| 30S ribosomal protein S18, putative [Streptococcus pneumoniae SP18-B... gi\|147758699, gi... - gi\|149003239\|ref\|ZP_01828135.1\| 30S ribosomal protein S18, putative [Streptococcus pneumoniae SP14-B... gi\|147756452, gi... - gi\|148997397\|ref\|ZP_01825002.1\| 30S ribosomal protein S18, putative [Streptococcus pneumoniae SP11-B... gi\|148992571, gi... - gi\|148992571\|ref\|ZP_01822239.1\| 30S ribosomal protein S18, putative [Streptococcus pneumoniae SP9-BS... RS18_STRZJ - 30S ribosomal protein S18 OS=Streptococcus pneumoniae (strain JJA) GN=rpsR PE=3 SV=1 RS18_STRZP - 30S ribosomal protein S18 OS=Streptococcus pneumoniae (strain P1031) GN=rpsR PE=3 SV=1 gi\|237650221 - gi\|237650221\|ref\|ZP_04524473.1\| 30S ribosomal protein S18 [Streptococcus pneumoniae CCRI 1974] gi\|237820896 - gi\|237820896\|ref\|ZP_04596741.1\| 30S ribosomal protein S18 [Streptococcus pneumoniae CCRI 1974M2] RS18_STRP7 - 30S ribosomal protein S18 OS=Streptococcus pneumoniae (strain 70585) GN=rpsR PE=3 SV=1 RS18_STRZT - 30S ribosomal protein S18 OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=rpsR PE=3 SV=1 RS18_STRR6 - 30S ribosomal protein S18 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=rpsR PE=3 SV=1 gi\|242236772, gi... - gi\|242244753\|ref\|ZP_04799190.1\| 30S ribosomal protein S18 [Streptococcus pneumoniae TCH8431/19A], gi... gi\|254996706 - gi\|254996706\|dbj\|BAH87307.1\| 30S ribosomal protein S18 [Streptococcus mutans NN2025] RS18_STRPN - 30S ribosomal protein S18 OS=Streptococcus pneumoniae GN=rpsR PE=3 SV=1 RS18_STRP2 - 30S ribosomal protein S18 OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=rpsR PE... RS18_STRSV - 30S ribosomal protein S18 OS=Streptococcus sanguinis (strain SK36) GN=rpsR PE=3 SV=1 RS18_STRMU - 30S ribosomal protein S18 OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) GN=rpsR PE... RS18_STRPN - 30S ribosomal protein S18 OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=rp...	113.0	[0..1]	[79..1]
gi\|242349573, gi... - gi\|242372656\|ref\|ZP_04818230.1\| 30S ribosomal protein S18 [Staphylococcus epidermidis M23864:W1], gi... RS18_STAEP - (Q8CQP6) 30S ribosomal protein S18 RS18_STAEQ - 30S ribosomal protein S18 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rpsR PE=3 SV=... gi\|223043454, gi... - gi\|223043454\|ref\|ZP_03613500.1\| ribosomal protein S18 [Staphylococcus capitis SK14], gi\|222443243\|gb... RS18_STAES - 30S ribosomal protein S18 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rpsR PE=3 SV=1	113.0	[0..1]	[80..1]
gi\|228271886, gi... - gi\|228474191\|ref\|ZP_04058928.1\| ribosomal protein S18 [Staphylococcus hominis SK119], gi\|228271886\|g... RS18_STAHJ - 30S ribosomal protein S18 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpsR PE=3 SV=1	112.0	[0..1]	[79..1]
RS18_BACCN - 30S ribosomal protein S18 OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-...	112.0	[0..4]	[78..3]
RS18_STAAN - 30S ribosomal protein S18 OS=Staphylococcus aureus (strain N315) GN=rpsR PE=1 SV=1 RS18_STAAB - 30S ribosomal protein S18 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rpsR PE=3 SV=1 RS18_STAAW - 30S ribosomal protein S18 OS=Staphylococcus aureus (strain MW2) GN=rpsR PE=3 SV=1 RS18_STAA2 - 30S ribosomal protein S18 OS=Staphylococcus aureus (strain JH1) GN=rpsR PE=3 SV=1 RS18_STAA9 - 30S ribosomal protein S18 OS=Staphylococcus aureus (strain JH9) GN=rpsR PE=3 SV=1 RS18_STAAM - 30S ribosomal protein S18 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rpsR PE=3 SV=1 RS18_STAAT - 30S ribosomal protein S18 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rpsR PE=3 SV=1 RS18_STAA8 - 30S ribosomal protein S18 OS=Staphylococcus aureus (strain NCTC 8325) GN=rpsR PE=3 SV=1 RS18_STAA3 - 30S ribosomal protein S18 OS=Staphylococcus aureus (strain USA300) GN=rpsR PE=3 SV=1 gi\|227247384, gi... - gi\|227556113\|ref\|ZP_03986160.1\| 30S ribosomal protein S18 [Staphylococcus aureus subsp. aureus MN8],... gi\|227898142, gi... - gi\|227898142\|ref\|ZP_04015947.1\| 30S ribosomal protein S18 [Staphylococcus aureus subsp. aureus TCH60... gi\|251812469, gi... - gi\|251812469\|ref\|ZP_04826942.1\| 30S ribosomal protein S18 [Staphylococcus aureus subsp. aureus TCH70... gi\|253316532 - gi\|253316532\|ref\|ZP_04839745.1\| 30S ribosomal protein S18 [Staphylococcus aureus subsp. aureus str. ... gi\|253730731, gi... - gi\|253730731\|ref\|ZP_04864896.1\| 30S ribosomal protein S18 [Staphylococcus aureus subsp. aureus USA30... RS18_STAAE - 30S ribosomal protein S18 OS=Staphylococcus aureus (strain Newman) GN=rpsR PE=3 SV=1 gi\|253726910, gi... - gi\|253735110\|ref\|ZP_04869275.1\| 30S ribosomal protein S18 [Staphylococcus aureus subsp. aureus TCH13... gi\|255005162 - gi\|255005162\|ref\|ZP_05143763.2\| 30S ribosomal protein S18 [Staphylococcus aureus subsp. aureus Mu50-... gi\|87126925\|gb\|A... - ribosomal protein S18 [Staphylococcus aureus subsp. aureus USA300], ribosomal protein S18 [Staphyloc... RS18_STAA1 - 30S ribosomal protein S18 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rpsR PE=3 SV=1 RS18_STAAR - 30S ribosomal protein S18 OS=Staphylococcus aureus (strain MRSA252) GN=rpsR PE=3 SV=1 RS18_STAAS - 30S ribosomal protein S18 OS=Staphylococcus aureus (strain MSSA476) GN=rpsR PE=3 SV=1 gi\|25507763 - pir\|\|H89802 30S ribosomal protein S18 [imported] - Staphylococcus aureus (strain N315) RS18_STAAC - 30S ribosomal protein S18 OS=Staphylococcus aureus (strain COL) GN=rpsR PE=3 SV=1 gi\|269202015\|ref... - 30S ribosomal protein S18 [Staphylococcus aureus subsp. aureus ED98] gi\|221142675 - gi\|221142675\|ref\|ZP_03567168.1\| 30S ribosomal protein S18 [Staphylococcus aureus subsp. aureus str. ... gi\|221139493 - gi\|221139493\|ref\|ZP_03564292.1\| 30S ribosomal protein S18 [Staphylococcus aureus subsp. aureus str. ...	111.0	[0..1]	[80..1]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQQRRGGFK RRKKVDFIAA NKIEVVDYKD TELLKRFISE RGKILPRRVT GTSAKNQRKV  60
   61 VNAIKRARVM ALLPFVAEDQ N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.045757
Match:	1vs5R
Description:	No description for 1vs5R was found.

Predicted functions:

Term	Confidence	Notes
structural molecule activity	0.36378695673226	bayes_pls_golite062009
structural constituent of ribosome	0.351838444516321	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: