YRC Public Data Repository - Protein Structure Prediction

Protein:	SAS1_LACSH
Organism:	Laceyella sacchari
Length:	71 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SAS1_LACSH.

Description	E-value	Query Range	Subject Range
gi\|56911410, gi\|... - gi\|56965166\|ref\|YP_176898.1\| small acid-soluble spore protein [Bacillus clausii KSM-K16], gi\|5691141...	103.0	[0..5]	[69..2]
SAS1_BACIU - Small, acid-soluble spore protein 1 OS=Bacillus subtilis PE=1 SV=2	102.0	[0..1]	[70..1]
SAS1_GEOSE - Small, acid-soluble spore protein 1 OS=Geobacillus stearothermophilus GN=sasP-1 PE=3 SV=1	101.0	[0..1]	[70..1]
gi\|20807933 - gi\|20807933\|ref\|NP_623104.1\| Small, acid-soluble spore proteins, alpha/be [Thermoanaerobacter tengco... gi\|20807933, gi\|... - gi\|20807933\|ref\|NP_623104.1\| small, acid-soluble spore proteins, alpha/be [Thermoanaerobacter tengco...	100.0	[0..3]	[71..1]
gi\|89087641, gi\|... - gi\|89097782\|ref\|ZP_01170670.1\| small acid-soluble spore protein [Bacillus sp. NRRL B-14911], gi\|8908...	100.0	[0..5]	[69..2]
gi\|3688809 - gi\|3688809\|gb\|AAC62407.1\| SspA [Bacillus firmus]	100.0	[0..5]	[69..2]
gi\|89200450, gi\|... - gi\|89200450\|ref\|ZP_01179203.1\| Small acid-soluble spore protein, alpha/beta type [Bacillus cereus su...	99.0	[0..5]	[69..2]
gi\|52004661, gi\|... - gi\|52786825\|ref\|YP_092654.1\| hypothetical protein BLi03099 [Bacillus licheniformis ATCC 14580], gi\|5...	99.0	[0..1]	[70..1]
gi\|229497166, gi... - gi\|229497166\|ref\|ZP_04390867.1\| small acid-soluble spore protein alpha/beta type [Geobacillus sp. Y4... gi\|220707957, gi... - gi\|221088195\|ref\|ZP_03557728.1\| small acid-soluble spore protein alpha/beta type [Geobacillus sp. Y4... gi\|56381171, gi\|... - gi\|56421329\|ref\|YP_148647.1\| small acid-soluble spore protein (major alpha-type SASP) [Geobacillus k...	99.0	[0..8]	[71..4]

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Predicted Domain #1

Region A:
Residues: [1-71]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQQGRNRSS NQLLVAGAAQ AIDQMKFEIA QEFGVTLGAD TTSRANGSVG GEITKRLVSL  60
   61 AQQQLGGGTS F

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	35.283997
Match:	PF00269.11
Description:	No description for PF00269.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.579	0.906	DNA topological change	a.156.1	S13-like H2TH domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits