YRC Public Data Repository - Protein Structure Prediction

Protein:	TPM2_RAT
Organism:	Rattus norvegicus
Length:	284 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TPM2_RAT.

Description	E-value	Query Range	Subject Range
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	172.0	[0..2]	[283..2593]
gi\|213636 - gi\|213636\|gb\|AAA49509.1\| alpha-tropomyosin gi\|86150 - gi\|86150\|pir\|\|A28499 tropomyosin alpha chain, skin fibroblast - Japanese quail gi\|833620, gi\|104894 - gi\|833620\|emb\|CAA41059.1\| alpha tropomyosin of fibroblasts F2 [Gallus gallus], pir\|\|S24402 alpha-tro...	160.0	[0..1]	[284..1]
gi\|211226 - gi\|211226\|gb\|AAA48610.1\| alpha-tropomyosin	160.0	[0..1]	[284..1]
gi\|74000387 - gi\|74000387\|ref\|XP_864999.1\| PREDICTED: similar to tropomyosin 1, alpha isoform 11 [Canis familiaris...	158.0	[0..1]	[284..1]
gi\|31560030, gi\|... - pir\|\|A60597 tropomyosin 2, fibroblast - mouse, gi\|31560030\|ref\|NP_077745.2\| tropomyosin 1, alpha [M... gi\|78000190, gi\|... - gi\|78000190\|ref\|NP_001029241.1\| tropomyosin 1, alpha isoform b [Rattus norvegicus], gi\|207500\|gb\|AAA... gi\|53734411 - gb\|AAH83940.1\| Unknown (protein for MGC:97928) [Xenopus laevis] gi\|126277014 - gi\|126277014\|ref\|XP_001366077.1\| PREDICTED: similar to tropomyosin 2, fibroblast - rat isoform 6 [Mo... gi\|109081405 - gi\|109081405\|ref\|XP_001104296.1\| PREDICTED: similar to tropomyosin 1, alpha isoform b isoform 21 [Ma...	158.0	[0..1]	[284..1]
gi\|126277008 - gi\|126277008\|ref\|XP_001365954.1\| PREDICTED: similar to tropomyosin 2, fibroblast - rat isoform 4 [Mo... gi\|26328709 - gi\|26328709\|dbj\|BAC28093.1\| unnamed protein product [Mus musculus] gi\|109081395 - gi\|109081395\|ref\|XP_001103704.1\| PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin)...	158.0	[0..1]	[284..1]
TPM1_BOVIN - Tropomyosin alpha-1 chain OS=Bos taurus GN=TPM1 PE=2 SV=1 gi\|182636740, gi... - gi\|187607525\|ref\|NP_001119823.1\| tropomyosin 1 (alpha) [Ovis aries], gi\|182636740\|gb\|ACB97628.1\| TPM...	158.0	[0..1]	[284..1]

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Predicted Domain #1

Region A:
Residues: [1-284]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAIKKKMQM LKLDKENAID RAEQAEADKK QAEDRCKQLE EEQQALQKKL KGTEDEVEKY  60
   61 SESVKDAQEK LEQAEKKATD AEADVASLNR RIQLVEEELD RAQERLATAL QKLEEAEKAA 120
  121 DESERGMKVI ENRAMKDEEK MELQEMQLKE AKHIAEDSDR KYEEVARKLV ILEGELERSE 180
  181 ERAEVAESKC GDLEEELKIV TNNLKSLEAQ ADKYSTKEDK YEEEIKLLEE KLKEAETRAE 240
  241 FAERSVAKLE KTIDDLEDEV YAQKMKYKAI SEELDNALND ITSL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.522879
Match:	2tmaA
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits