YRC Public Data Repository - Protein Structure Prediction

Protein:	TRPR_CHLCV
Organism:	Chlamydophila caviae
Length:	101 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRPR_CHLCV.

Description	E-value	Query Range	Subject Range
TRPR_PHOLL - Trp operon repressor OS=Photorhabdus luminescens subsp. laumondii GN=trpR PE=3 SV=1 TRPR_PHOLL - Trp operon repressor OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / T...	134.0	[0..5]	[97..14]
gi\|227080881, gi... - gi\|227080881\|ref\|YP_002809432.1\| putative trp operon repressor [Vibrio cholerae M66-2], gi\|227008769... gi\|121587777, gi... - gi\|121587777\|ref\|ZP_01677537.1\| trp operon repressor, putative [Vibrio cholerae 2740-80], gi\|1215480... gi\|126510732, gi... - gi\|153818710\|ref\|ZP_01971377.1\| trp operon repressor, putative [Vibrio cholerae NCTC 8457], gi\|12651... gi\|254846736, gi... - gi\|254851031\|ref\|ZP_05240381.1\| trp operon repressor [Vibrio cholerae MO10], gi\|254846736\|gb\|EET2515... gi\|153822748, gi... - gi\|153822748\|ref\|ZP_01975415.1\| trp operon repressor, putative [Vibrio cholerae B33], gi\|126519731\|g... gi\|9655142, gi\|1... - gi\|9655142\|gb\|AAF93866.1\| trp operon repressor, putative [Vibrio cholerae O1 biovar El Tor str. N169... gi\|11356017 - gi\|11356017\|pir\|\|G82290 probable trp operon repressor VC0701 [imported] - Vibrio cholerae (strain N1...	130.0	[0..1]	[95..16]
TRPR_VIBVU - Trp operon repressor homolog OS=Vibrio vulnificus GN=trpR PE=3 SV=1 TRPR_VIBVU - Trp operon repressor homolog OS=Vibrio vulnificus (strain CMCP6) GN=trpR PE=3 SV=1 TRPR_VIBVY - Trp operon repressor homolog OS=Vibrio vulnificus (strain YJ016) GN=trpR PE=3 SV=1	129.0	[0..1]	[99..1]
TRPR_PASMU - Trp operon repressor homolog OS=Pasteurella multocida GN=trpR PE=3 SV=1 TRPR_PASMU - Trp operon repressor homolog OS=Pasteurella multocida (strain Pm70) GN=trpR PE=3 SV=1	126.0	[0..1]	[95..1]
gi\|229512410, gi... - gi\|229512410\|ref\|ZP_04401884.1\| hypothetical protein VCB_000050 [Vibrio cholerae TMA 21], gi\|2293505... gi\|75815405 - gi\|75815405\|ref\|ZP_00745916.1\| COG2973: Trp operon repressor [Vibrio cholerae V52] gi\|75826059 - gi\|75826059\|ref\|ZP_00755494.1\| COG2973: Trp operon repressor [Vibrio cholerae O395] gi\|229519972, gi... - gi\|229519972\|ref\|ZP_04409402.1\| hypothetical protein VIF_000488 [Vibrio cholerae TM 11079-80], gi\|22...	126.0	[0..1]	[95..1]
TRPR_SODGM - Trp operon repressor OS=Sodalis glossinidius (strain morsitans) GN=trpR PE=3 SV=1	126.0	[0..3]	[96..12]
TRPR_SALG2 - Trp operon repressor OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=trpR PE=3 SV=1 TRPR_SALHS - Trp operon repressor OS=Salmonella heidelberg (strain SL476) GN=trpR PE=3 SV=1 TRPR_SALSV - Trp operon repressor OS=Salmonella schwarzengrund (strain CVM19633) GN=trpR PE=3 SV=1 gi\|197265882, gi... - gi\|197265882\|ref\|ZP_03165956.1\| trp operon repressor [Salmonella enterica subsp. enterica serovar Sa... TRPR_SALDC - Trp operon repressor OS=Salmonella dublin (strain CT_02021853) GN=trpR PE=3 SV=1 gi\|168244517, gi... - gi\|205336626\|gb\|EDZ23390.1\| trp operon repressor [Salmonella enterica subsp. enterica serovar Heidel... lcl\|NC_016856.1_... - [gene=trpR] [protein=Trp operon repressor] [protein_id=YP_005240928.1] [location=4853863..4854189] gi\|168464496, gi... - gi\|195632825\|gb\|EDX51279.1\| trp operon repressor [Salmonella enterica subsp. enterica serovar Newpor... gi\|168822124, gi... - gi\|205341371\|gb\|EDZ28135.1\| trp operon repressor [Salmonella enterica subsp. enterica serovar Weltev... TRPR_SALNS - Trp operon repressor OS=Salmonella newport (strain SL254) GN=trpR PE=3 SV=1 gi\|205331499, gi... - gi\|205331499\|gb\|EDZ18263.1\| trp operon repressor [Salmonella enterica subsp. enterica serovar 4,[5],... gi\|168234716, gi... - gi\|197291711\|gb\|EDY31061.1\| trp operon repressor [Salmonella enterica subsp. enterica serovar Schwar... TRPR_SALTY - Trp operon repressor OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=trpR PE=3 SV... TRPR_SALTY - Trp operon repressor OS=Salmonella typhimurium GN=trpR PE=3 SV=2 TRPR_SALTY - Trp operon repressor OS=Salmonella typhimurium GN=trpR PE=3 SV=2	124.0	[0..3]	[98..12]
gi\|75819391, gi\|... - gi\|75819391\|ref\|ZP_00749473.1\| COG2973: Trp operon repressor [Vibrio cholerae V51], gi\|116220078\|ref... gi\|229505680, gi... - gi\|229505680\|ref\|ZP_04395190.1\| hypothetical protein VCF_000891 [Vibrio cholerae BX 330286], gi\|2293... gi\|229354270, gi... - gi\|229508746\|ref\|ZP_04398239.1\| hypothetical protein VCE_000151 [Vibrio cholerae B33], gi\|229354270\|... gi\|75829553, gi\|... - gi\|75829553\|ref\|ZP_00758852.1\| COG2973: Trp operon repressor [Vibrio cholerae MO10], gi\|116188427\|re... gi\|229344193, gi... - gi\|229519504\|ref\|ZP_04408947.1\| hypothetical protein VCC_003534 [Vibrio cholerae RC9], gi\|229344193\|... gi\|229608699, gi... - gi\|229608699\|ref\|YP_002879347.1\| hypothetical protein VCD_003621 [Vibrio cholerae MJ-1236], gi\|22937... TRPR_VIBCH - Trp operon repressor homolog OS=Vibrio cholerae GN=trpR PE=3 SV=2 TRPR_VIBCH - Trp operon repressor homolog OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961...	124.0	[0..1]	[95..1]
TRPR_CHLFF - Trp operon repressor homolog OS=Chlamydia felis (strain Fe/C-56) GN=trpR PE=3 SV=1	124.0	[0..1]	[101..1]
TRPR_ENTAE - Trp operon repressor OS=Enterobacter aerogenes GN=trpR PE=3 SV=1	124.0	[0..2]	[99..11]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQESNENGW GDFLELCSKI KTPEAFHDFF ALFLTFGERE SMASRFLIVQ ALLAEQLTQR  60
   61 EIAQKYGVSI AQITRGSNAL KAIDPKFKEF LKNLNRKYGN Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	1rcsA
Description:	Trp repressor, TrpR
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits