YRC Public Data Repository - Protein Structure Prediction

Protein:	TRPR_SALTY
Organism:	Salmonella typhimurium
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRPR_SALTY.

Description	E-value	Query Range	Subject Range
TRPR_PHOLL - Trp operon repressor OS=Photorhabdus luminescens subsp. laumondii GN=trpR PE=3 SV=1 TRPR_PHOLL - Trp operon repressor OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / T...	128.0	[0..1]	[106..1]
gi\|170663373, gi... - gi\|170663373\|gb\|EDT16056.1\| TrpR homolog YerC/YecD [Clostridium perfringens E str. JGS1987], gi\|1682... gi\|110799881, gi... - gi\|110799881\|ref\|YP_697023.1\| TrpR-like protein YerC/YecD [Clostridium perfringens ATCC 13124], gi\|1... gi\|169296687, gi... - gi\|169347004\|ref\|ZP_02865946.1\| TrpR homolog YerC/YecD [Clostridium perfringens C str. JGS1495], gi\|... gi\|182381246, gi... - gi\|182381246\|gb\|EDT78725.1\| TrpR homolog YerC/YecD [Clostridium perfringens NCTC 8239], gi\|168216701... gi\|168213245, gi... - gi\|170715293\|gb\|EDT27475.1\| TrpR homolog YerC/YecD [Clostridium perfringens CPE str. F4969], gi\|1682... gi\|168210362, gi... - gi\|170711531\|gb\|EDT23713.1\| TrpR homolog YerC/YecD [Clostridium perfringens B str. ATCC 3626], gi\|16... gi\|177908972, gi... - gi\|182625816\|ref\|ZP_02953583.1\| TrpR homolog YerC/YecD [Clostridium perfringens D str. JGS1721], gi\|... gi\|18311316, gi\|... - gi\|18311316\|ref\|NP_563250.1\| TrpR-like protein YerC/YecD [Clostridium perfringens str. 13], gi\|18145...	125.0	[0..7]	[106..1]
gi\|110683853, gi... - gi\|110803352\|ref\|YP_699595.1\| TrpR-like protein YerC/YecD [Clostridium perfringens SM101], gi\|110683...	125.0	[0..7]	[106..1]
gi\|78043299, gi\|... - gi\|78043299\|ref\|YP_359928.1\| hypothetical protein CHY_1082 [Carboxydothermus hydrogenoformans Z-2901...	124.0	[0..12]	[106..6]
gi\|67849255, gi\|... - gi\|67916798\|ref\|ZP_00510492.1\| Trp repressor [Clostridium thermocellum ATCC 27405], gi\|67849255\|gb\|E...	124.0	[0..10]	[107..1]
gi\|25341354 - pir\|\|G83729 hypothetical protein BH0639 [imported] - Bacillus halodurans (strain C-125) gi\|10173253, gi\|... - gi\|15613202\|ref\|NP_241505.1\| hypothetical protein BH0639 [Bacillus halodurans C-125], gi\|10173253\|db...	123.0	[0..12]	[108..4]
gi\|98662540 - gi\|98662540\|dbj\|GAA00569.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	123.0	[0..7]	[103..1]
gi\|56418808, gi\|... - gi\|56418808\|ref\|YP_146126.1\| hypothetical protein GK0273 [Geobacillus kaustophilus HTA426], gi\|56378...	122.0	[0..12]	[103..4]
gi\|89088468, gi\|... - gi\|89097088\|ref\|ZP_01169979.1\| hypothetical protein B14911_19325 [Bacillus sp. NRRL B-14911], gi\|890...	122.0	[0..12]	[108..4]
gi\|227080881, gi... - gi\|227080881\|ref\|YP_002809432.1\| putative trp operon repressor [Vibrio cholerae M66-2], gi\|227008769... gi\|121587777, gi... - gi\|121587777\|ref\|ZP_01677537.1\| trp operon repressor, putative [Vibrio cholerae 2740-80], gi\|1215480... gi\|126510732, gi... - gi\|153818710\|ref\|ZP_01971377.1\| trp operon repressor, putative [Vibrio cholerae NCTC 8457], gi\|12651... gi\|254846736, gi... - gi\|254851031\|ref\|ZP_05240381.1\| trp operon repressor [Vibrio cholerae MO10], gi\|254846736\|gb\|EET2515... gi\|153822748, gi... - gi\|153822748\|ref\|ZP_01975415.1\| trp operon repressor, putative [Vibrio cholerae B33], gi\|126519731\|g... gi\|9655142, gi\|1... - gi\|9655142\|gb\|AAF93866.1\| trp operon repressor, putative [Vibrio cholerae O1 biovar El Tor str. N169... gi\|11356017 - gi\|11356017\|pir\|\|G82290 probable trp operon repressor VC0701 [imported] - Vibrio cholerae (strain N1...	122.0	[0..4]	[105..10]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQHSPYSSA IAEQRNQEWL RFVELLRQAY AEDLHLPLLQ LMLTPDEREA LGTRVRIIEE  60
   61 LLRGEMSQRE LKTELGAGIA TITRGSNSLK SAPVELRHWL ENVLLKNA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.221849
Match:	3wrpA
Description:	FLEXIBILITY OF THE DNA-BINDING DOMAINS OF TRP REPRESSOR
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits