YRC Public Data Repository - Protein Structure Prediction

Protein:	UBL5_DANRE
Organism:	Danio rerio
Length:	73 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBL5_DANRE.

Description	E-value	Query Range	Subject Range
gi\|115487294, gi... - gi\|77553656\|gb\|ABA96452.1\| GRF zinc finger family protein [Oryza sativa (japonica cultivar-group)], ...	151.0	[0..1]	[72..206]
gi\|40889756 - gi\|40889756\|pdb\|1UH6\|A Chain A, Solution Structure Of The Murine Ubiquitin-Like 5 Protein From Riken...	147.0	[0..1]	[72..28]
gi\|38492721 - gi\|38492721\|pdb\|1P0R\|A Chain A, Solution Structure Of Ubl5 A Human Ubiquitin-Like Protein	144.0	[0..1]	[72..21]
gi\|60653607, gi\|... - gi\|60653609\|gb\|AAX29498.1\| ubiquitin-like 5 [synthetic construct], gi\|60653607\|gb\|AAX29497.1\| ubiqui...	140.0	[0..1]	[72..1]
gi\|50256170, gi\|... - gi\|50256170\|gb\|EAL18897.1\| hypothetical protein CNBI1580 [Cryptococcus neoformans var. neoformans B-... gi\|57230145, gi\|... - gi\|58261306\|ref\|XP_568063.1\| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21], g...	138.0	[0..1]	[71..206]
gi\|91078218 - gi\|91078218\|ref\|XP_969246.1\| PREDICTED: similar to predicted protein [Tribolium castaneum]	137.0	[0..1]	[72..1]
gi\|110645764, gi... - gi\|170284687\|gb\|AAI61316.1\| Ubl5 protein [Xenopus tropicalis], gi\|110645764\|gb\|AAI18888.1\| Ubl5 prot...	137.0	[0..1]	[72..2]
hub1 - ubiquitin-like protein modifier Hub1 HUB1_SCHPO - Ubiquitin-like modifier hub1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hub1 PE=1 SV=...	136.0	[0..1]	[72..1]

Back

Predicted Domain #1

Region A:
Residues: [1-73]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEVVCNDRL GKKVRVKCNQ EDTIGDLKKL IAAQTGTRWE KIVLKKWYTI FKNHVSLGDY  60
   61 EIHDGMNLEL YYL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.154902
Match:	1uh6A
Description:	Solution Structure of the murine ubiquitin-like 5 protein from RIKEN cDNA 0610031K06
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits