YRC Public Data Repository - Protein Structure Prediction

Protein:	SO4274
Organism:	Shewanella oneidensis
Length:	267 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO4274.

Description	E-value	Query Range	Subject Range
gi\|110595055, gi... - gi\|110595055\|ref\|ZP_01383393.1\| undecaprenol kinase, putative [Acidovorax sp. JS42], gi\|110335605\|gb...	316.0	[0..2]	[265..284]
UPPP_PSEAB - Undecaprenyl-diphosphatase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=uppP PE=3 SV=1	301.0	[0..1]	[265..1]
UPPP_PSEF5 - Undecaprenyl-diphosphatase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=uppP PE=3 SV=1	301.0	[0..1]	[265..1]
UPPP1_BURXL - Undecaprenyl-diphosphatase 1 OS=Burkholderia xenovorans (strain LB400) GN=uppP1 PE=3 SV=1	301.0	[0..1]	[266..1]
UPPP_PSEA7 - Undecaprenyl-diphosphatase OS=Pseudomonas aeruginosa (strain PA7) GN=uppP PE=3 SV=1	299.0	[0..1]	[265..1]
gi\|113527602, gi... - gi\|113868826\|ref\|YP_727315.1\| undecaprenyl pyrophosphate phosphatase [Ralstonia eutropha H16], gi\|11...	299.0	[0..1]	[265..14]
UPPP_PSEAE - Undecaprenyl-diphosphatase OS=Pseudomonas aeruginosa GN=uppP PE=3 SV=1 UPPP_PSEAE - Undecaprenyl-diphosphatase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG ... gi\|107101388 - gi\|107101388\|ref\|ZP_01365306.1\| hypothetical protein PaerPA_01002425 [Pseudomonas aeruginosa PACS2] gi\|84321417, gi\|... - gi\|84321417\|ref\|ZP_00969775.1\| COG1968: Uncharacterized bacitracin resistance protein [Pseudomonas a... gi\|126193721, gi... - gi\|84327790\|ref\|ZP_00975806.1\| COG1968: Uncharacterized bacitracin resistance protein [Pseudomonas a...	299.0	[0..1]	[265..1]
UPPP_CUPPJ - Undecaprenyl-diphosphatase OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) GN=uppP PE=3 SV...	296.0	[0..1]	[265..1]
UPPP1_BURCH - Undecaprenyl-diphosphatase 1 OS=Burkholderia cenocepacia (strain HI2424) GN=uppP1 PE=3 SV=1 gi\|84357020 - gi\|84357020\|ref\|ZP_00981850.1\| COG1968: Uncharacterized bacitracin resistance protein [Burkholderia ... gi\|118651622, gi... - gi\|170732240\|ref\|YP_001764187.1\| undecaprenyl pyrophosphate phosphatase [Burkholderia cenocepacia MC... UPPP1_BURCA - Undecaprenyl-diphosphatase 1 OS=Burkholderia cenocepacia (strain AU 1054) GN=uppP1 PE=3 SV=1	295.0	[0..1]	[266..1]
UPPP_RALSO - Undecaprenyl-diphosphatase OS=Ralstonia solanacearum (strain GMI1000) GN=uppP PE=3 SV=1 UPPP_RALSO - Undecaprenyl-diphosphatase OS=Ralstonia solanacearum GN=uppP PE=3 SV=1	294.0	[0..1]	[265..1]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLIYFIKAF FLGVIEGITE FLPISSTGHL ILIGDWINFS SNEEKVFEVV IQLGGILAVC  60
   61 WLFRDKIINL INGVLK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.711	0.467	response to antibiotic	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.712	0.042	peptidoglycan biosynthetic process	a.118.1	ARM repeat
View	Download	0.728	0.007	peptidoglycan biosynthetic process	a.8.3	Families 57/38 glycoside transferase middle domain
View	Download	0.787	0.004	peptidoglycan biosynthetic process	a.126.1	Serum albumin-like
View	Download	0.775	0.002	peptidoglycan biosynthetic process	a.181.1	Antibiotic binding domain of TipA-like multidrug resistance regulators

Predicted Domain #2

Region A:
Residues: [77-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDPVAQRFAV IVMISFLPSA IIGALFIHDI KNVLFNTTVV ATALIVGGLI ILWVENRKDS  60
   61 EKFKIENIEK IGFKQAIIIG IAQCIAMIPG TSRSGATIVG GMLSGVSRKA ATEYSFFLAI 120
  121 PTMLGAAIYD ASKNYHLLNT DDILAILIGF SAAFISALIV VNALIRFVAK HSLSVFAWYR 180
  181 IALGLIIFSV N

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits