YRC Public Data Repository - Protein Structure Prediction

Protein:	UPPP_RALSO
Organism:	Ralstonia solanacearum
Length:	293 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UPPP_RALSO.

Description	E-value	Query Range	Subject Range
gi\|113527602, gi... - gi\|113868826\|ref\|YP_727315.1\| undecaprenyl pyrophosphate phosphatase [Ralstonia eutropha H16], gi\|11...	339.0	[0..1]	[293..14]
UPPP_CUPPJ - Undecaprenyl-diphosphatase OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) GN=uppP PE=3 SV...	338.0	[0..1]	[293..1]
UPPP_CUPMC - Undecaprenyl-diphosphatase OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 ...	336.0	[0..1]	[293..1]
gi\|206595517, gi... - gi\|207744113\|ref\|YP_002260505.1\| undecaprenyl-diphosphatase (undecaprenyl pyrophosphatephosphatase) ... gi\|206591398, gi... - gi\|207728153\|ref\|YP_002256547.1\| undecaprenyl-diphosphatase [Ralstonia solanacearum MolK2], gi\|20659... gi\|83746204, gi\|... - gi\|83746204\|ref\|ZP_00943258.1\| Bacitracin resistance protein (Putative undecaprenol kinase) [Ralston...	332.0	[0..1]	[293..1]
gi\|110595055, gi... - gi\|110595055\|ref\|ZP_01383393.1\| undecaprenol kinase, putative [Acidovorax sp. JS42], gi\|110335605\|gb...	329.0	[0..2]	[292..284]
UPPP_PSEF5 - Undecaprenyl-diphosphatase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=uppP PE=3 SV=1	320.0	[0..1]	[293..1]
UPPP1_BURXL - Undecaprenyl-diphosphatase 1 OS=Burkholderia xenovorans (strain LB400) GN=uppP1 PE=3 SV=1	315.0	[0..1]	[292..1]
UPPP1_BURCH - Undecaprenyl-diphosphatase 1 OS=Burkholderia cenocepacia (strain HI2424) GN=uppP1 PE=3 SV=1 gi\|84357020 - gi\|84357020\|ref\|ZP_00981850.1\| COG1968: Uncharacterized bacitracin resistance protein [Burkholderia ... gi\|118651622, gi... - gi\|170732240\|ref\|YP_001764187.1\| undecaprenyl pyrophosphate phosphatase [Burkholderia cenocepacia MC... UPPP1_BURCA - Undecaprenyl-diphosphatase 1 OS=Burkholderia cenocepacia (strain AU 1054) GN=uppP1 PE=3 SV=1	312.0	[0..1]	[292..1]
UPPP_PSEAB - Undecaprenyl-diphosphatase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=uppP PE=3 SV=1	312.0	[0..1]	[292..1]
gi\|134138117, gi... - gi\|67545830\|ref\|ZP_00423749.1\| Bacitracin resistance protein BacA [Burkholderia vietnamiensis G4], g...	311.0	[0..1]	[292..1]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIALAIKAL ILGIVEGLTE FLPISSTGHL ILAGQLLDFN DEKGKIFEIV IQFGAILAVC  60
   61 WEFRHKIIDV IKGLPNDPRQ QRFALNVIVA TIPAITLALI FGKAIKAHLF NPIVVASAFI 120
  121 IGGLVILWAE WRERHRGQTH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [141-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPRGNALLEA AKAGAPRVET LDDLRLSDAF KVGLAQCFAL IPGTSRSGST IIGGLLFGLS  60
   61 RKVATEFSFF LAIPVIFGAT VYELYKERAL LSTDDLSIFG IGFVAAFISA FFCVRWLLRF 120
  121 IASHDFRGFA WYRIVFGVIV LVTAYTHLIA WQA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits