YRC Public Data Repository - Protein Structure Prediction

Protein:	SO1861
Organism:	Shewanella oneidensis
Length:	609 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO1861.

Description	E-value	Query Range	Subject Range
UVRC_ECOBW - UvrABC system protein C OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=uvrC PE=3 SV=1 gi\|253324179, gi... - gi\|253773135\|ref\|YP_003035966.1\| excinuclease ABC, C subunit [Escherichia coli BL21(DE3)], gi\|253324... gi\|254793563, gi... - gi\|254793563\|ref\|YP_003078400.1\| excinuclease UvrABC, endonuclease subunit [Escherichia coli O157:H7... gi\|194421508, gi... - gi\|83585049\|ref\|ZP_00923703.1\| COG0322: Nuclease subunit of the excinuclease complex [Escherichia co... UVRC_ECO24 - UvrABC system protein C OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=uvrC PE=3 SV=1 UVRC_ECO7I - UvrABC system protein C OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=uvrC PE=3 SV=1 UVRC_ECO55 - UvrABC system protein C OS=Escherichia coli (strain 55989 / EAEC) GN=uvrC PE=3 SV=1 UVRC_ECOLU - UvrABC system protein C OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=uvrC PE=3 SV=1 UVRC_ECOLI - UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) - Escherichia coli UVRC_SHISS - UvrABC system protein C OS=Shigella sonnei (strain Ss046) GN=uvrC PE=3 SV=2 UVRC_ECOL6 - UvrABC system protein C OS=Escherichia coli O6 GN=uvrC PE=3 SV=1 sp\|B7UST2\|UVRC_ECO27 - UvrABC system protein C OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=uvrC PE=3 SV=1 gi\|89108748, gi\|... - gi\|89108748\|ref\|AP_002528.1\| excinuclease UvrABC, endonuclease subunit [Escherichia coli str. K-12 s... gi\|38704033 - gi\|38704033\|ref\|NP_310678.2\| excinuclease ABC subunit C [Escherichia coli O157:H7 str. Sakai] UVRC_ECOL6 - UvrABC system protein C OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=uvrC PE=3 ... UVRC_ECO57 - UvrABC system protein C OS=Escherichia coli O157:H7 GN=uvrC PE=3 SV=1 EG11063 - excinuclease UvrABC, endonuclease subunit / Excision nuclease subunit C; repair of UV damage to DNA;... gi\|208731333, gi... - gi\|208816990\|ref\|ZP_03258110.1\| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC4045], ... UVRC_ECODH - UvrABC system protein C OS=Escherichia coli (strain K12 / DH10B) GN=uvrC PE=3 SV=1 UVRC_ECOSE - UvrABC system protein C OS=Escherichia coli (strain SE11) GN=uvrC PE=3 SV=1 UVRC_ECO5E - UvrABC system protein C OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=uvrC PE=3 SV=1 gi\|217328731, gi... - gi\|217328731\|ref\|ZP_03444812.1\| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. TW14588],... UVRC_ECO27 - UvrABC system protein C OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=uvrC PE=3 SV=1 UVRC_ECO81 - UvrABC system protein C OS=Escherichia coli O81 (strain ED1a) GN=uvrC PE=3 SV=1 UVRC_ECO8A - UvrABC system protein C OS=Escherichia coli O8 (strain IAI1) GN=uvrC PE=3 SV=1 EG11063 - excinuclease UvrABC, endonuclease subunit / Excision nuclease subunit C; repair of UV damage to DNA;... UVRC_ECOHS - UvrABC system protein C OS=Escherichia coli O9:H4 (strain HS) GN=uvrC PE=3 SV=1 gi\|193071134, gi... - gi\|75233961\|ref\|ZP_00718414.1\| COG0322: Nuclease subunit of the excinuclease complex [Escherichia co... gi\|191173286, gi... - gi\|75239189\|ref\|ZP_00723166.1\| COG0322: Nuclease subunit of the excinuclease complex [Escherichia co... gi\|188495148, gi... - gi\|75511465\|ref\|ZP_00734140.1\| COG0322: Nuclease subunit of the excinuclease complex [Escherichia co... gi\|161367590 - gi\|161367590\|ref\|NP_288374.2\| excinuclease ABC subunit C [Escherichia coli O157:H7 EDL933] gi\|189375231, gi... - gi\|189375231\|gb\|EDU93647.1\| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC508], gi\|16... gi\|189370222, gi... - gi\|189370222\|gb\|EDU88638.1\| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC869], gi\|16... gi\|227837234, gi... - gi\|227885661\|ref\|ZP_04003466.1\| excinuclease ABC subunit C [Escherichia coli 83972], gi\|227837234\|gb...	766.0	[0..1]	[608..1]
gi\|192925962, gi... - gi\|75255512\|ref\|ZP_00727304.1\| COG0322: Nuclease subunit of the excinuclease complex [Escherichia co... UVRC_ECOLC - UvrABC system protein C OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=uvrC PE=3 SV=1 gi\|194412021, gi... - gi\|75208839\|ref\|ZP_00709123.1\| COG0322: Nuclease subunit of the excinuclease complex [Escherichia co... gi\|124531455, gi... - gi\|124531455\|ref\|ZP_01701739.1\| excinuclease ABC, C subunit [Escherichia coli B], gi\|124498570\|gb\|EA... gi\|195182997 - gi\|195182997\|dbj\|BAG66563.1\| endonuclease subunit of excinuclease UvrABC [Escherichia coli O111:H-]	766.0	[0..1]	[608..1]
gi\|237705868, gi... - gi\|237705868\|ref\|ZP_04536349.1\| excinuclease ABC subunit C [Escherichia sp. 3_2_53FAA], gi\|226900625... UVRC_ECOUT - UvrABC system protein C OS=Escherichia coli (strain UTI89 / UPEC) GN=uvrC PE=3 SV=1	765.0	[0..1]	[608..1]
UVRC_SHIB3 - UvrABC system protein C OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=uvrC PE=3 SV=...	765.0	[0..1]	[608..1]
UVRC_ECOK1 - UvrABC system protein C OS=Escherichia coli O1:K1 / APEC GN=uvrC PE=3 SV=1	764.0	[0..1]	[608..1]
UVRC_SALPK - UvrABC system protein C OS=Salmonella paratyphi A (strain AKU_12601) GN=uvrC PE=3 SV=1 UVRC_SALPA - UvrABC system protein C OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=uvrC PE=3 SV=1 UVRC_SALPA - UvrABC system protein C OS=Salmonella paratyphi A GN=uvrC PE=3 SV=1	757.0	[0..1]	[608..1]
UVRC_SALTY - UvrABC system protein C OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=uvrC PE=3... UVRC_SALTY - UvrABC system protein C OS=Salmonella typhimurium GN=uvrC PE=3 SV=2 UVRC_SALTY - UvrABC system protein C OS=Salmonella typhimurium GN=uvrC PE=3 SV=2	756.0	[0..1]	[608..1]
UVRC_YERPS - UvrABC system protein C OS=Yersinia pseudotuberculosis GN=uvrC PE=3 SV=1 UVRC_YERPS - UvrABC system protein C OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=uvrC PE=3 SV=1	756.0	[0..1]	[608..1]
gi\|16760892 - gi\|16760892\|ref\|NP_456509.1\| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar... UVRC_SALTI - UvrABC system protein C OS=Salmonella typhi GN=uvrC PE=3 SV=1 gi\|213426360 - gi\|213426360\|ref\|ZP_03359110.1\| excinuclease ABC subunit C [Salmonella enterica subsp. enterica sero... gi\|213053517 - gi\|213053517\|ref\|ZP_03346395.1\| excinuclease ABC subunit C [Salmonella enterica subsp. enterica sero... UVRC_SALTI - UvrABC system protein C OS=Salmonella typhi GN=uvrC PE=3 SV=1 gi\|29141416, gi\|... - gi\|29141416\|ref\|NP_804758.1\| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar... gi\|213999631 - gi\|213999631\|ref\|ZP_03410366.1\| excinuclease ABC subunit C [Salmonella enterica subsp. enterica sero... gi\|213650332 - gi\|213650332\|ref\|ZP_03380385.1\| excinuclease ABC subunit C [Salmonella enterica subsp. enterica sero... gi\|213580419 - gi\|213580419\|ref\|ZP_03362245.1\| excinuclease ABC subunit C [Salmonella enterica subsp. enterica sero...	756.0	[0..1]	[608..1]
gi\|229897980, gi... - gi\|229897980\|ref\|ZP_04513131.1\| excinuclease ABC subunit C [Yersinia pestis biovar Orientalis str. I... gi\|115347596, gi... - gi\|16122117\|ref\|NP_405430.1\| excinuclease ABC subunit C [Yersinia pestis CO92], gi\|15979888\|emb\|CAC9... UVRC_YERPN - UvrABC system protein C OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=uvrC PE=3 SV=2 UVRC_YERP3 - UvrABC system protein C OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=uvrC PE=3 ... UVRC_YERPA - UvrABC system protein C OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=uvrC PE=3 SV=2 gi\|149366188, gi... - gi\|149366188\|ref\|ZP_01888223.1\| excinuclease ABC subunit C [Yersinia pestis CA88-4125], gi\|149292601... gi\|167049528, gi... - gi\|167401139\|ref\|ZP_02306642.1\| UvrABC system, C protein [Yersinia pestis biovar Antiqua str. UG05-0... UVRC_YERPE - UvrABC system protein C OS=Yersinia pestis GN=uvrC PE=3 SV=1 gi\|229693589, gi... - gi\|229897252\|ref\|ZP_04512408.1\| excinuclease ABC subunit C [Yersinia pestis biovar Orientalis str. P... gi\|229896315, gi... - gi\|229896315\|ref\|ZP_04511485.1\| excinuclease ABC subunit C [Yersinia pestis Pestoides A], gi\|2297012...	755.0	[0..1]	[608..1]

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Predicted Domain #1

Region A:
Residues: [1-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTGFNAQSF LRTVTSSAGV YRMYDVKGDV IYVGKAKDLK KRLSSYFRKN LGNVKTQALV  60
   61 SHIHHIDVTL THSETDALLL ENDYIKQYMP KYNVLLRDDK SYPYILLSQH EHPRLAYHRG 120
  121 PQREKGHYFG PYPNGGAVRE SLHLMQKLFP IRQCDDLYYK SRTRPCLQYQ LSR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.0
Match:	1yd6A
Description:	Crystal structure of the GIY-YIG N-terminal endonuclease domain of UvrC from Bacillus caldotenax
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [174-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CSAPCVGKVS NAEYDEQVKL ASLFLKGKDK QVISELVAKM EEAAEQQAYE QAARFRDQIM  60
   61 ALRRVAEQQE VSG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.21
Match:	1e52A
Description:	C-terminal UvrC-binding domain of UvrB
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [247-343]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTGDMDVIGV HYASGIACFH LLFIREGKIF GSRSYYPTVP AQTDIEEVLR SFLLQFYLNA  60
   61 DIQRTIPKEV VISHHFEELH ELEAAVSEAL NKKFSIK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [344-609]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNVRADRASF LRLAITNATN AVMTRLSHKN TVEQRFVLLE EILELNAPIQ RMECFDISHT  60
   61 MGESTVASCV VFNREGPHKA EYRRYNIEGI TPGDDYAAMK QAISRRFDKI DASGKIPDIL 120
  121 FIDGGLGQLR IAQQIVDEKF VNLDKAPQLI GVAKGESRKP GLETLIFGDT ETSFSLEDDS 180
  181 PALHLIQHIR DESHRFAITG HRNRRQKTRN TSTLESIPGI GPKRRKALLQ HLGGLQEVKG 240
  241 ASVAELAKVP GISIEMAQTI HDALRG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.09691
Match:	2nrtA
Description:	No description for 2nrtA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits