YRC Public Data Repository - Protein Structure Prediction

Protein:	pssy-2
Organism:	Caenorhabditis elegans
Length:	557 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pssy-2.

Description	E-value	Query Range	Subject Range
CE24019 - WBGene00012095 locus:pssy-2 phosphatidylserine synthase I status:Partially_confirmed TR:O18143 prote...	811.0	[0..1]	[557..1]
gi\|157777340 - gi\|157777340\|ref\|XP_001666736.1\| hypothetical protein CBG15323 [Caenorhabditis briggsae AF16] gi\|39581373, gi\|... - gi\|39581373\|emb\|CAE69270.1\| Hypothetical protein CBG15323 [Caenorhabditis briggsae], gi\|187027228\|em...	659.0	[0..105]	[556..1]
gi\|220943494, gi... - gi\|220953516\|gb\|ACL89301.1\| CG4825-PA [synthetic construct], gi\|220943494\|gb\|ACL84290.1\| CG4825-PA [... CG4825-PA - This gene is referred to in FlyBase by the symbol Dmel\CG4825 (CG4825, FBgn0037010). It is a protein...	616.0	[0..57]	[512..5]
gi\|73999621 - gi\|73999621\|ref\|XP_854779.1\| PREDICTED: similar to Phosphatidylserine synthase I (PtdSer synthase-1)...	604.0	[0..71]	[519..7]
gi\|27881972, gi\|... - gi\|41055684\|ref\|NP_957250.1\| phosphatidylserine synthase 1 [Danio rerio], gi\|27881972\|gb\|AAH44533.1\|...	599.0	[0..119]	[518..18]
PTSS1_BOVIN - Phosphatidylserine synthase 1 OS=Bos taurus GN=PTDSS1 PE=2 SV=1	595.0	[0..119]	[519..18]
PTDSS1 - phosphatidylserine synthase 1 gi\|123981844, gi... - gi\|168274294\|dbj\|BAG09567.1\| phosphatidylserine synthase 1 [synthetic construct], gi\|123996673\|gb\|AB... gi\|114621003 - gi\|114621003\|ref\|XP_519868.2\| PREDICTED: phosphatidylserine synthase 1 isoform 2 [Pan troglodytes]	593.0	[0..119]	[519..18]
gi\|47225496 - gi\|47225496\|emb\|CAG11979.1\| unnamed protein product [Tetraodon nigroviridis]	593.0	[0..119]	[519..13]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKPFKTEKG LLYLKLCIFA SFSAHSDFKY IYNFYNLFSE FLDSLSIFTR FFALQMSDSD  60
   61 DSDYSQIEHP RISSRSRSPP VSGQEQNLED EGFTTECDNN PDSVDRKFAG LLDRMELEKK 120
  121 HYDMINERIV D

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [132-339]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVTMDQFYKP HSITVLVLVI ALLIYKATFG KAENSTEKNY YDGFLGAGAL FLLISALTFP  60
   61 NGPFIRPHPI LWRVIFGLSV IYVIVLQFAL FQSFDDLKKI LTWLDSEGLG QKSLEEKEYA 120
  121 SECWNLSPAK IWSHVDFFAF AHFTGWIMKT LLLRHWVLCW FLSIIWEFTE LMFIDLLPNF 180
  181 AECWWDSLIL DVLLCNGVGI YVGMKLCN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [340-557]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FLQMRQFHWE SIRNIKSRRG KMKRFALQFT PASWSGYDWY NSKSKANALR RTCLLSFLVF  60
   61 FWLLAELNTF FIKHVFAIDT KHPVVFWRII LIAVIAAPTI RQFYVFSTDP LTRRVGMQSW 120
  121 VFVVICVLEL AICVKCGGIM FAKTSGWNML LWAMSIIIGT ISCILASTWY AEHFGTTARV 180
  181 LVKGRRRLCY LESSHENLGM LQDDVIKKRE EYLTPKRS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits