YRC Public Data Repository - Protein Structure Prediction

Protein:	gpdh-2
Organism:	Caenorhabditis elegans
Length:	304 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gpdh-2.

Description	E-value	Query Range	Subject Range
gi\|114644819 - gi\|114644819\|ref\|XP_001154886.1\| PREDICTED: glycerol-3-phosphate dehydrogenase 1 (soluble) isoform 1...	367.0	[0..1]	[304..1]
GPDA_MOUSE - Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic OS=Mus musculus GN=Gpd1 PE=1 SV=3	364.0	[0..1]	[304..1]
gi\|1362809, gi\|1... - gi\|99031611\|pdb\|1WPQ\|B Chain B, Ternary Complex Of Glycerol 3-Phosphate Dehydrogenase 1 With Nad And...	364.0	[0..1]	[304..1]
GPDA_RAT - Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic OS=Rattus norvegicus GN=Gpd1 PE=1 SV=4	363.0	[0..1]	[304..1]
gi\|60810758 - gi\|60810758\|gb\|AAX36153.1\| glycerol-3-phosphate dehydrogenase 1 [synthetic construct]	363.0	[0..1]	[304..1]

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Predicted Domain #1

Region A:
Residues: [1-304]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPKKVTIIG SGNWGSAIAR IVGSTTKSFP DEFDPTVRMW VFEEIVNGEK LSEVINNRHE  60
   61 NIKYLPGKVL PNNVGVSTEK RGGLKLISEE IKEILKIEVS VLMGANLAPE VANDNFCEAT 120
  121 IGCKRKAEDG PLLKKLFHTD NFRINVVEDA HTVELCGALK NVVACAAGFT DGLGYGDNTK 180
  181 AAVIRLGLME TTKFVEHYYP GSNLQTFFES CGIADLITTC YGGRNRKVCE AFVKTGKSMA 240
  241 EVEKELLNGQ SAQGPLTAEE VYLMMHKTGL DAKFPLFTAV HKICAGEMKP AELVDCLRNH 300
  301 PEHM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	101.0
Match:	1wpqA
Description:	No description for 1wpqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits