YRC Public Data Repository - Protein Structure Prediction

Protein:	WZA_SALTI
Organism:	Salmonella typhi
Length:	379 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for WZA_SALTI.

Description	E-value	Query Range	Subject Range
gi\|160864077, gi... - gi\|161502730\|ref\|YP_001569842.1\| hypothetical protein SARI_00780 [Salmonella enterica subsp. arizona... lcl\|NC_016856.1_... - [gene=wza] [protein=putative outer membrane polysaccharide export protein] [protein_id=YP_005238154.... WZA_SALTY - Putative polysaccharide export protein wza OS=Salmonella typhimurium GN=wza PE=3 SV=1 gi\|56127238, gi\|... - gi\|56412981\|ref\|YP_150056.1\| putative polysaccharide export protein [Salmonella enterica subsp. ente... gi\|62128322, gi\|... - gi\|62180689\|ref\|YP_217106.1\| putative polysaccharide export protein, outer membrane [Salmonella ente... WZA_SALTY - Putative polysaccharide export protein wza OS=Salmonella typhimurium GN=wza PE=3 SV=1 WZA_SALTY - Putative polysaccharide export protein wza OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7...	0.0	[1..379]	[1..379]
gi\|115513382, gi... - gi\|117624258\|ref\|YP_853171.1\| putative polysaccharide export protein [Escherichia coli APEC O1], gi\|... gi\|238861669, gi... - gi\|238901252\|ref\|YP_002927048.1\| lipoprotein required for capsular polysaccharide translocation thro... gi\|242377713, gi... - gi\|251785440\|ref\|YP_002999744.1\| hypothetical protein B21_01957 [Escherichia coli BL21], gi\|24237771... gi\|124500382, gi... - gi\|124528695\|ref\|ZP_01699953.1\| polysaccharide export protein [Escherichia coli B], gi\|124500382\|gb\|... gi\|226900883, gi... - gi\|237704517\|ref\|ZP_04534998.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|254593246, gi... - gi\|254793846\|ref\|YP_003078683.1\| lipoprotein required for capsular polysaccharide translocation thro... EG13566 - colanic acid export protein; outer membrane auxillary lipoprotein / Colanic acid export channel lipo... gi\|254288842, gi... - gi\|254288842\|ref\|YP_003054590.1\| lipoprotein required for capsular polysaccharide translocation thro... gi\|253973955, gi... - gi\|254162054\|ref\|YP_003045162.1\| lipoprotein required for capsular polysaccharide translocation thro... EG13566 - colanic acid export protein; outer membrane auxillary lipoprotein / Colanic acid export channel lipo... WZA_ECO57 - Putative polysaccharide export protein wza OS=Escherichia coli O157:H7 GN=wza PE=3 SV=1 gi\|91211349, gi\|... - gi\|91211349\|ref\|YP_541335.1\| putative polysaccharide export protein [Escherichia coli UTI89], gi\|910... gi\|15832121, gi\|... - gi\|15832121\|ref\|NP_310894.1\| putative polysaccharide export protein [Escherichia coli O157:H7 str. S... gi\|12516259, gi\|... - gi\|15802542\|ref\|NP_288568.1\| putative polysaccharide export protein [Escherichia coli O157:H7 EDL933... gi\|157080932, gi... - gi\|157158902\|ref\|YP_001463415.1\| polysaccharide biosynthesis/export protein [Escherichia coli E24377... gi\|168757961, gi... - gi\|189355147\|gb\|EDU73566.1\| polysaccharide biosynthesis/export protein [Escherichia coli O157:H7 str... gi\|209398882, gi... - gi\|209398882\|ref\|YP_002271305.1\| polysaccharide biosynthesis/export protein [Escherichia coli O157:H... gi\|208817195, gi... - gi\|208817195\|ref\|ZP_03258287.1\| polysaccharide biosynthesis/export protein [Escherichia coli O157:H7... gi\|215487285, gi... - gi\|215487285\|ref\|YP_002329716.1\| lipoprotein required for capsular polysaccharide translocation thro... gi\|209912786, gi... - gi\|209919527\|ref\|YP_002293611.1\| putative polysaccharide export protein [Escherichia coli SE11], gi\|... WZA_ECOLI - Putative polysaccharide export protein wza precursor - Escherichia coli gi\|194428764, gi... - gi\|194428764\|ref\|ZP_03061300.1\| polysaccharide biosynthesis/export protein [Escherichia coli B171], ... gi\|188488260, gi... - gi\|188493061\|ref\|ZP_03000331.1\| polysaccharide biosynthesis/export protein [Escherichia coli 53638],... gi\|208809309, gi... - gi\|208809309\|ref\|ZP_03251646.1\| polysaccharide biosynthesis/export protein [Escherichia coli O157:H7... gi\|195938255 - gi\|195938255\|ref\|ZP_03083637.1\| lipoprotein required for capsular polysaccharide translocation throu... gi\|170081692, gi... - gi\|170081692\|ref\|YP_001731012.1\| lipoprotein required for capsular polysaccharide translocation thro... gi\|170019611, gi... - gi\|170019611\|ref\|YP_001724565.1\| polysaccharide export protein [Escherichia coli ATCC 8739], gi\|1697... gi\|187731528, gi... - gi\|187731528\|ref\|YP_001879817.1\| polysaccharide biosynthesis/export protein [Shigella boydii CDC 308... gi\|170521488, gi... - gi\|170683770\|ref\|YP_001743079.1\| polysaccharide biosynthesis/export protein [Escherichia coli SMS-3-... gi\|168769816, gi... - gi\|189361272\|gb\|EDU79691.1\| polysaccharide biosynthesis/export protein [Escherichia coli O157:H7 str... gi\|189367754, gi... - gi\|189367754\|gb\|EDU86170.1\| polysaccharide biosynthesis/export protein [Escherichia coli O157:H7 str... gi\|168799055, gi... - gi\|189378498\|gb\|EDU96914.1\| polysaccharide biosynthesis/export protein [Escherichia coli O157:H7 str... gi\|168775488, gi... - gi\|187768976\|gb\|EDU32820.1\| polysaccharide biosynthesis/export protein [Escherichia coli O157:H7 str... gi\|85675205, gi\|... - gi\|89108882\|ref\|AP_002662.1\| lipoprotein required for capsular polysaccharide translocation through ... gi\|73856064, gi\|... - gi\|74312587\|ref\|YP_311006.1\| putative polysaccharide export protein [Shigella sonnei Ss046], gi\|7385... gi\|218705595, gi... - gi\|218705595\|ref\|YP_002413114.1\| lipoprotein required for capsular polysaccharide translocation thro... gi\|218369332, gi... - gi\|218699346\|ref\|YP_002406975.1\| lipoprotein required for capsular polysaccharide translocation thro... gi\|168986387, gi... - gi\|168986387\|dbj\|BAG11926.1\| lipoprotein Wza required for capsular polysaccharide translocation thro... gi\|218365710, gi... - gi\|218558941\|ref\|YP_002391854.1\| lipoprotein required for capsular polysaccharide translocation thro... gi\|218361398, gi... - gi\|218554630\|ref\|YP_002387543.1\| lipoprotein required for capsular polysaccharide translocation thro... gi\|218352417, gi... - gi\|218695685\|ref\|YP_002403352.1\| lipoprotein required for capsular polysaccharide translocation thro... gi\|218690120, gi... - gi\|218690120\|ref\|YP_002398332.1\| lipoprotein required for capsular polysaccharide translocation thro...	0.0	[1..379]	[1..379]
gi\|24113446, gi\|... - gi\|24113446\|ref\|NP_707956.1\| putative polysaccharide export protein [Shigella flexneri 2a str. 301],... gi\|30041764, gi\|... - gi\|30063511\|ref\|NP_837682.1\| putative polysaccharide export protein [Shigella flexneri 2a str. 2457T...	0.0	[1..379]	[1..379]
gi\|227835466, gi... - gi\|227887116\|ref\|ZP_04004921.1\| polysaccharide exporter [Escherichia coli 83972], gi\|227835466\|gb\|EE... gi\|110343864, gi... - gi\|110642272\|ref\|YP_670002.1\| putative polysaccharide export protein wza precursor [Escherichia coli...	0.0	[1..379]	[1..379]
gi\|82543438, gi\|... - gi\|82543438\|ref\|YP_407385.1\| putative polysaccharide export protein [Shigella boydii Sb227], gi\|8124...	0.0	[1..379]	[1..379]
gi\|10946230\|gb\|A... - putative outer membrane lipoprotein [Salmonella typhimurium] gi\|10946230 - gi\|10946230\|gb\|AAG24804.1\| putative outer membrane lipoprotein [Salmonella typhimurium]	0.0	[2..379]	[1..378]
gi\|110806031, gi... - gi\|110806031\|ref\|YP_689551.1\| putative polysaccharide export protein [Shigella flexneri 5 str. 8401]...	0.0	[6..379]	[1..374]
YC04_KLEPN - Putative capsule polysaccharide export protein OS=Klebsiella pneumoniae PE=3 SV=1	0.0	[1..379]	[1..377]

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Predicted Domain #1

Region A:
Residues: [1-379]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKSKMKLMP LLASLSLISG CTVLPGSNMS TMGKDVIKQQ DADFDLDRMV NVYPLTPRLV  60
   61 EQLRPRPNVA QPNMSLDQEI ASYQYRVGPG DVLNVTVWDH PELTTPAGQY RSSSDTGNWA 120
  121 QPDGTMFYPY IGKVSVVGKT LSEIRSDITG RLAKYIADPQ VDVNIAAFRS QKAYISGQVN 180
  181 KSGQQAITNV PLTVLDAINA AGGLTDMADW RNVVLTHNGK EQRISLQALM QNGDLSQNRL 240
  241 LYPGDILYVP RNDDLKVFVM GEVKKQSTLK MDFSSMTLTE ALGNAEGIDL TTSNASGIFV 300
  301 IRPLKGEGGR GGKIANIYQL DMSDATSLVM ATEFRLQPYD VVYVTTAPVA RWNRLINQLL 360
  361 PTISGVRYMT DTASDIHSW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	107.0
Match:	2j58A
Description:	No description for 2j58A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits