YRC Public Data Repository - Protein Structure Prediction

Protein:	Y008_METKA
Organism:	Methanopyrus kandleri
Length:	121 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y008_METKA.

Description	E-value	Query Range	Subject Range
gi\|78700533, gi\|... - gi\|78700533\|ref\|ZP_00864989.1\| DsrE protein [Alkalilimnicola ehrlichei MLHE-1], gi\|78522020\|gb\|EAP35...	129.0	[0..9]	[121..2]
gi\|88928617, gi\|... - gi\|88948727\|ref\|ZP_01151490.1\| DsrE protein [Halorhodospira halophila SL1], gi\|88928617\|gb\|EAR47578....	127.0	[0..10]	[121..3]
gi\|74057996, gi\|... - gi\|74318501\|ref\|YP_316241.1\| DsrE protein [Thiobacillus denitrificans ATCC 25259], gi\|74057996\|gb\|AA...	126.0	[0..10]	[121..3]
gi\|82947309, gi\|... - gi\|83312468\|ref\|YP_422732.1\| intracellular sulfur oxidation protein dsrE [Magnetospirillum magneticu...	124.0	[0..9]	[121..2]
Y989_METJA - Uncharacterized protein MJ0989 OS=Methanocaldococcus jannaschii GN=MJ0989 PE=4 SV=1 Y989_METJA - Uncharacterized protein MJ0989 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-...	124.0	[0..9]	[121..2]
gi\|189346232, gi... - gi\|67919701\|ref\|ZP_00513268.1\| DsrE-like protein [Chlorobium limicola DSM 245], gi\|67782669\|gb\|EAM42...	124.0	[0..9]	[121..2]
gi\|23013192 - gi\|23013192\|ref\|ZP_00053121.1\| COG1553: Uncharacterized conserved protein involved in intracellular ...	124.0	[0..9]	[121..2]
gi\|194332886, gi... - gi\|68553312\|ref\|ZP_00592689.1\| DsrE-like protein [Prosthecochloris aestuarii DSM 271], gi\|68239764\|g...	122.0	[0..10]	[121..3]
gi\|75257127, gi\|... - gi\|75257127\|ref\|ZP_00728663.1\| COG1553: Uncharacterized conserved protein involved in intracellular ... gi\|194425837, gi... - gi\|75212656\|ref\|ZP_00712654.1\| COG1553: Uncharacterized conserved protein involved in intracellular ...	121.0	[0..7]	[121..1]
gi\|218431840, gi... - gi\|218704743\|ref\|YP_002412262.1\| hypothetical protein ECUMN_1518 [Escherichia coli UMN026], gi\|21843... gi\|110343042, gi... - gi\|110641450\|ref\|YP_669180.1\| putative ACR involved in intracellular sulfur reduction [Escherichia c... gi\|226899940, gi... - gi\|237705183\|ref\|ZP_04535664.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|227836561, gi... - gi\|227886357\|ref\|ZP_04004162.1\| dsrE family protein [Escherichia coli 83972], gi\|227836561\|gb\|EEJ470... gi\|26107946, gi\|... - gi\|26247544\|ref\|NP_753584.1\| hypothetical protein c1679 [Escherichia coli CFT073], gi\|26107946\|gb\|AA... gi\|190908776, gi... - gi\|75242023\|ref\|ZP_00725817.1\| COG1553: Uncharacterized conserved protein involved in intracellular ... gi\|91072016, gi\|... - gi\|91210442\|ref\|YP_540428.1\| hypothetical protein UTI89_C1415 [Escherichia coli UTI89], gi\|91072016\|...	121.0	[0..7]	[121..1]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTPEGIDVI TVVISEAPYG QERAYTALRF ALTALVEGEE VKIFLIEDGV FLGKKGQNPD  60
   61 EVPNYLELLE QCIEQGAEVK ACGPCSKARG LSEEDFIEGV ELATMHDLVN WVKESDNVIF 120
  121 F

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.154902
Match:	1jx7A
Description:	Hypothetical protein YchN
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits