YRC Public Data Repository - Protein Structure Prediction

Protein:	Y357_VIBCH, TUSC...
Organism:	Vibrio cholerae
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y357_VIBCH, TUSC....

Description	E-value	Query Range	Subject Range
Y008_METKA - Uncharacterized protein MK0008 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 10... Y008_METKA - Uncharacterized protein MK0008 OS=Methanopyrus kandleri GN=MK0008 PE=4 SV=1	129.0	[0..4]	[118..10]
gi\|78700533, gi\|... - gi\|78700533\|ref\|ZP_00864989.1\| DsrE protein [Alkalilimnicola ehrlichei MLHE-1], gi\|78522020\|gb\|EAP35...	128.0	[0..3]	[118..2]
gi\|54307532, gi\|... - gi\|54307532\|ref\|YP_128552.1\| hypothetical protein PBPRA0311 [Photobacterium profundum SS9], gi\|46911...	126.0	[0..1]	[118..1]
gi\|23013192 - gi\|23013192\|ref\|ZP_00053121.1\| COG1553: Uncharacterized conserved protein involved in intracellular ...	126.0	[0..3]	[118..2]
gi\|88928617, gi\|... - gi\|88948727\|ref\|ZP_01151490.1\| DsrE protein [Halorhodospira halophila SL1], gi\|88928617\|gb\|EAR47578....	125.0	[0..1]	[118..1]
gi\|82947309, gi\|... - gi\|83312468\|ref\|YP_422732.1\| intracellular sulfur oxidation protein dsrE [Magnetospirillum magneticu...	125.0	[0..3]	[118..2]
gi\|67155867 - gi\|67155867\|ref\|ZP_00417494.1\| DsrE-like protein [Azotobacter vinelandii AvOP] gi\|67155867, gi\|... - gi\|67155867\|ref\|ZP_00417494.1\| DsrE-like protein [Azotobacter vinelandii AvOP], gi\|67086811\|gb\|EAM06...	125.0	[0..2]	[117..40]
TUSC_YERPG - Protein TusC OS=Yersinia pestis bv. Antiqua (strain Angola) GN=tusC PE=3 SV=1 TUSC_YERPB - Protein TusC OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=tusC PE=3 SV=1 TUSC_YERP3 - Protein TusC OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=tusC PE=3 SV=1 gi\|229842139, gi... - gi\|229842139\|ref\|ZP_04462294.1\| subunit of the heterohexameric YheLMN (TusBCD) mediator of sulfur re... gi\|229696423, gi... - gi\|229840057\|ref\|ZP_04460216.1\| subunit of the heterohexameric YheLMN (TusBCD) mediator of sulfur re... gi\|229836319, gi... - gi\|229836319\|ref\|ZP_04456486.1\| subunit of the heterohexameric YheLMN (TusBCD) mediator of sulfur re... gi\|165927842, gi... - gi\|165927842\|ref\|ZP_02223674.1\| tRNA 2-thiouridine synthesizing protein C [Yersinia pestis biovar Or... gi\|149290161, gi... - gi\|150260753\|ref\|ZP_01917481.1\| hypothetical protein YPE_3069 [Yersinia pestis CA88-4125], gi\|149290... gi\|165990531, gi... - gi\|166010441\|ref\|ZP_02231339.1\| tRNA 2-thiouridine synthesizing protein C [Yersinia pestis biovar An... gi\|166205533, gi... - gi\|166213235\|ref\|ZP_02239270.1\| tRNA 2-thiouridine synthesizing protein C [Yersinia pestis biovar An... gi\|167399514, gi... - gi\|167399514\|ref\|ZP_02305038.1\| tRNA 2-thiouridine synthesizing protein C [Yersinia pestis biovar An... TUSC_YERPP - Protein TusC OS=Yersinia pestis (strain Pestoides F) GN=tusC PE=3 SV=1 gi\|167419227, gi... - gi\|167419227\|ref\|ZP_02310980.1\| tRNA 2-thiouridine synthesizing protein C [Yersinia pestis biovar Or... gi\|167425638, gi... - gi\|167425638\|ref\|ZP_02317391.1\| tRNA 2-thiouridine synthesizing protein C [Yersinia pestis biovar Me... TUSC_YERPY - Protein TusC OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=tusC PE=3 SV=1 TUSC_YERPS - Protein TusC OS=Yersinia pseudotuberculosis GN=tusC PE=3 SV=1 gi\|45440057, gi\|... - gi\|45440057\|ref\|NP_991596.1\| hypothetical protein YP_0197 [Yersinia pestis biovar Microtus str. 9100... gi\|21960984, gi\|... - gi\|22127850\|ref\|NP_671273.1\| hypothetical protein y3980 [Yersinia pestis KIM], gi\|21960984\|gb\|AAM875... gi\|15978299, gi\|... - gi\|218927405\|ref\|YP_002345280.1\| sulfur relay protein TusC [Yersinia pestis CO92], gi\|16120537\|ref\|N... TUSC_YERPS - Protein TusC OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=tusC PE=3 SV=1 gi\|165940014, gi... - gi\|89102815\|ref\|ZP_01175423.1\| COG2923: Uncharacterized protein involved in the oxidation of intrace... TUSC_YERPA - Protein TusC OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=tusC PE=3 SV=1 TUSC_YERPE - Protein TusC OS=Yersinia pestis GN=tusC PE=3 SV=1 TUSC_YERPN - Protein TusC OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=tusC PE=3 SV=1	123.0	[0..2]	[118..4]
gi\|77974997 - gi\|77974997\|ref\|ZP_00830534.1\| COG2923: Uncharacterized protein involved in the oxidation of intrace...	122.0	[0..1]	[118..3]
gi\|75257127, gi\|... - gi\|75257127\|ref\|ZP_00728663.1\| COG1553: Uncharacterized conserved protein involved in intracellular ... gi\|194425837, gi... - gi\|75212656\|ref\|ZP_00712654.1\| COG1553: Uncharacterized conserved protein involved in intracellular ...	122.0	[0..1]	[118..1]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKVAWVFHT PPHGSTAGRE GLDAILATSA YSEEQALFFV GEGVLQLVNH QHPESILSRD  60
   61 YISAFKLLDL YDIEARYVCQ QSLVSWGLSE QDLLIEVEVV DAQALAQLLH HYDQLLTF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.045757
Match:	2d1pB
Description:	crystal structure of heterohexameric TusBCD proteins, which are crucial for the tRNA modification
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits