YRC Public Data Repository - Protein Structure Prediction

Protein:	Y596_HAEDU
Organism:	Haemophilus ducreyi
Length:	246 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y596_HAEDU.

Description	E-value	Query Range	Subject Range
Y433_HAEI8 - Probable transcriptional regulatory protein NTHI0433 OS=Haemophilus influenzae (strain 86-028NP) GN=... Y4390_HAEIG - Probable transcriptional regulatory protein CGSHiGG_04390 OS=Haemophilus influenzae (strain PittGG) ... Y1480_HAEIE - Probable transcriptional regulatory protein CGSHiEE_01480 OS=Haemophilus influenzae (strain PittEE) ... gi\|145640259 - gi\|145640259\|ref\|ZP_01795843.1\| hypothetical protein CGSHiR3021_09380 [Haemophilus influenzae R3021] gi\|145272367, gi... - gi\|145638772\|ref\|ZP_01794381.1\| dATP pyrophosphohydrolase [Haemophilus influenzae PittII], gi\|145272... gi\|144986761, gi... - gi\|145632566\|ref\|ZP_01788300.1\| hypothetical protein CGSHi3655_02089 [Haemophilus influenzae 3655], ... gi\|144979135, gi... - gi\|145628665\|ref\|ZP_01784465.1\| Holliday junction resolvase [Haemophilus influenzae 22.1-21], gi\|144... Y315_HAEIN - UPF0082 protein HI_0315 OS=Haemophilus influenzae GN=HI_0315 PE=1 SV=1 gi\|53732943 - gi\|53732943\|ref\|ZP_00155322.2\| COG0217: Uncharacterized conserved protein [Haemophilus influenzae R2... gi\|53733202 - gi\|53733202\|ref\|ZP_00156156.2\| COG0217: Uncharacterized conserved protein [Haemophilus influenzae R2... Y315_HAEIN - Probable transcriptional regulatory protein HI_0315 OS=Haemophilus influenzae (strain ATCC 51907 / D... gi\|145274845, gi... - gi\|145640259\|ref\|ZP_01795843.1\| hypothetical protein CGSHiR3021_09380 [Haemophilus influenzae R3021]... gi\|229810496, gi... - gi\|229846403\|ref\|ZP_04466511.1\| hypothetical protein CGSHi7P49H1_07020 [Haemophilus influenzae 7P49H...	377.0	[0..1]	[246..1]
Y980_PASMU - UPF0082 protein PM0980 OS=Pasteurella multocida GN=PM0980 PE=3 SV=1 Y980_PASMU - Probable transcriptional regulatory protein PM0980 OS=Pasteurella multocida (strain Pm70) GN=PM0980 ...	377.0	[0..1]	[246..1]
Y1220_METCA - UPF0082 protein MCA1220 OS=Methylococcus capsulatus GN=MCA1220 PE=3 SV=1 Y1220_METCA - Probable transcriptional regulatory protein MCA1220 OS=Methylococcus capsulatus (strain ATCC 33009 /...	376.0	[0..1]	[246..1]
Y1763_HISS2 - Probable transcriptional regulatory protein HSM_1763 OS=Histophilus somni (strain 2336) GN=HSM_1763 ...	376.0	[0..1]	[246..1]
Y4410_PSEPF - Probable transcriptional regulatory protein Pfl01_4410 OS=Pseudomonas fluorescens (strain Pf0-1) GN=...	376.0	[0..1]	[246..1]
Y1210_ACTP7 - Probable transcriptional regulatory protein APP7_1210 OS=Actinobacillus pleuropneumoniae serotype 7 ... Y1151_ACTP2 - Probable transcriptional regulatory protein APL_1151 OS=Actinobacillus pleuropneumoniae serotype 5b ... gi\|32033872 - gi\|32033872\|ref\|ZP_00134143.1\| COG0217: Uncharacterized conserved protein [Actinobacillus pleuropneu...	375.0	[0..1]	[246..1]
Y1407_PSEU2 - Probable transcriptional regulatory protein Psyr_1407 OS=Pseudomonas syringae pv. syringae (strain B... tr\|F3G1F8\|F3G1F8... - Probable transcriptional regulatory protein PSYPI_00070 OS=Pseudomonas syringae pv. pisi str. 1704B ...	375.0	[0..1]	[246..1]
Y3775_PSE14 - Probable transcriptional regulatory protein PSPPH_3775 OS=Pseudomonas savastanoi pv. phaseolicola (s...	374.0	[0..1]	[246..1]
Y508_HAES1 - Probable transcriptional regulatory protein HS_0508 OS=Haemophilus somnus (strain 129Pt) GN=HS_0508 ...	374.0	[0..1]	[246..1]
Y2326_GEODF - Probable transcriptional regulatory protein Geob_2326 OS=Geobacter daltonii (strain DSM 22248 / JCM ...	373.0	[0..1]	[246..1]

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Predicted Domain #1

Region A:
Residues: [1-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGHSKWANI KHRKAAQDAQ RGKIFTKLIR ELVTAAKIGG GDVAANPRLR SAVDKALSSN  60
   61 MTRDTINRAI ERGVGGGDDT NMETKIYEGY GPGGTAVMVE CLSDNANRTI SQVRPSFTKC 120
  121 GGNLGTEGSV GYLFSKKGLI LIANADEDAL TEAAIEAGAD DIQAQEDGSF EIYTAWEDLG 180
  181 SVRDGIEAAG FNIQEAEVTM IPSTTVDLDA ETAPKLLKLI DMLEDCDDVQ NVYHNGEISD 240
  241 EVAALL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	103.0
Match:	1konA
Description:	Hypothetical protein YebC
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits