YRC Public Data Repository - Protein Structure Prediction

Protein:	Y718_VIBPA
Organism:	Vibrio parahaemolyticus
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y718_VIBPA.

Description	E-value	Query Range	Subject Range
Y945_VIBCH - UPF0250 protein VC_0945 OS=Vibrio cholerae GN=VC_0945 PE=3 SV=1 Y1669_VIBC3 - UPF0250 protein VC0395_A0469/VC395_0960 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classica... gi\|254848078, gi... - gi\|75830692\|ref\|ZP_00759965.1\| COG2921: Uncharacterized conserved protein [Vibrio cholerae MO10], gi... gi\|116219079, gi... - gi\|75818355\|ref\|ZP_00748530.1\| COG2921: Uncharacterized conserved protein [Vibrio cholerae V51], gi\|... gi\|75822447, gi\|... - gi\|75822447\|ref\|ZP_00752071.1\| COG2921: Uncharacterized conserved protein [Vibrio cholerae RC385], g... gi\|124115695, gi... - gi\|153213861\|ref\|ZP_01949067.1\| conserved hypothetical protein [Vibrio cholerae 1587], gi\|124115695\|... gi\|153223144, gi... - gi\|153223144\|ref\|ZP_01953682.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241183... gi\|121629678, gi... - gi\|75816442\|ref\|ZP_00746912.1\| COG2921: Uncharacterized conserved protein [Vibrio cholerae V52], gi\|... gi\|153817213, gi... - gi\|153817213\|ref\|ZP_01969880.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12651... gi\|126520361, gi... - gi\|229510877\|ref\|ZP_04400356.1\| hypothetical protein VCE_002284 [Vibrio cholerae B33], gi\|229350842\|... Y901_VIBCM - UPF0250 protein VCM66_0901 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=VCM66_0901 PE=3 SV=1 gi\|229505453, gi... - gi\|229505453\|ref\|ZP_04394963.1\| hypothetical protein VCF_000661 [Vibrio cholerae BX 330286], gi\|2293... gi\|229512960, gi... - gi\|229512960\|ref\|ZP_04402426.1\| hypothetical protein VCB_000603 [Vibrio cholerae TMA 21], gi\|2293498... gi\|229344713, gi... - gi\|229517998\|ref\|ZP_04407442.1\| hypothetical protein VCC_002022 [Vibrio cholerae RC9], gi\|229344713\|... gi\|229523261, gi... - gi\|229523261\|ref\|ZP_04412668.1\| hypothetical protein VIF_000117 [Vibrio cholerae TM 11079-80], gi\|22... gi\|229525557, gi... - gi\|229525557\|ref\|ZP_04414962.1\| hypothetical protein VCA_003189 [Vibrio cholerae bv. albensis VL426]... gi\|229333731, gi... - gi\|229529957\|ref\|ZP_04419347.1\| hypothetical protein VCG_003063 [Vibrio cholerae 12129(1)], gi\|22933... gi\|150424479, gi... - gi\|254285617\|ref\|ZP_04960581.1\| conserved hypothetical protein [Vibrio cholerae AM-19226], gi\|197753... gi\|229371127, gi... - gi\|229608472\|ref\|YP_002879120.1\| hypothetical protein VCD_003390 [Vibrio cholerae MJ-1236], gi\|22937... gi\|148875549, gi... - gi\|153828933\|ref\|ZP_01981600.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887554... Y945_VIBCH - UPF0250 protein VC_0945 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=... gi\|149740152, gi... - gi\|153826129\|ref\|ZP_01978796.1\| conserved hypothetical protein [Vibrio cholerae MZO-2], gi\|149740152...	140.0	[0..1]	[92..1]
Y902_VIBVY - UPF0250 protein VV0902 OS=Vibrio vulnificus (strain YJ016) GN=VV0902 PE=3 SV=1 Y282_VIBVU - UPF0250 protein VV1_0282 OS=Vibrio vulnificus GN=VV1_0282 PE=3 SV=1 Y282_VIBVU - UPF0250 protein VV1_0282 OS=Vibrio vulnificus (strain CMCP6) GN=VV1_0282 PE=3 SV=1	139.0	[0..1]	[92..1]
Y794_SODGM - UPF0250 protein SG0794 OS=Sodalis glossinidius (strain morsitans) GN=SG0794 PE=3 SV=1	135.0	[0..6]	[92..1]
gi\|238790456, gi... - gi\|77973027\|ref\|ZP_00828580.1\| COG2921: Uncharacterized conserved protein [Yersinia frederiksenii AT...	133.0	[0..6]	[92..1]
Y1293_PHOLL, YC9... - (Q7N765) Hypothetical UPF0250 protein plu1293, UPF0250 protein plu1293 OS=Photorhabdus luminescens s... Y1293_PHOLL - UPF0250 protein plu1293 OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 ...	132.0	[0..6]	[92..1]
gi\|77957579 - gi\|77957579\|ref\|ZP_00821631.1\| COG2921: Uncharacterized conserved protein [Yersinia bercovieri ATCC ...	132.0	[0..6]	[92..1]
Y1051_SHESR - UPF0250 protein Shewmr7_1051 OS=Shewanella sp. (strain MR-7) GN=Shewmr7_1051 PE=3 SV=1 Y990_SHESA - UPF0250 protein Shewana3_0990 OS=Shewanella sp. (strain ANA-3) GN=Shewana3_0990 PE=3 SV=1 Y986_SHESM - UPF0250 protein Shewmr4_0986 OS=Shewanella sp. (strain MR-4) GN=Shewmr4_0986 PE=3 SV=1	132.0	[0..5]	[92..1]
gi\|58176674 - gi\|58176674\|pdb\|1RWU\|A Chain A, Solution Structure Of Conserved Protein Ybed From E. Coli	132.0	[0..6]	[92..23]
SO1163 - conserved hypothetical protein Y1163_SHEON - UPF0250 protein SO_1163 OS=Shewanella oneidensis (strain MR-1) GN=SO_1163 PE=3 SV=1	131.0	[0..5]	[92..1]
gi\|229700860, gi... - gi\|229895937\|ref\|ZP_04511107.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229700860\|gb\|EEO... gi\|229688291, gi... - gi\|229898743\|ref\|ZP_04513888.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... gi\|166008480, gi... - gi\|166008480\|ref\|ZP_02229378.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|165925337, gi... - gi\|165925337\|ref\|ZP_02221169.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... Y1853_YERPG - UPF0250 protein YpAngola_A1853 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=YpAngola_A1853 PE=3... Y2499_YERPA - UPF0250 protein YPA_2499 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=YPA_2499 PE=3 SV=1 Y2953_YERP3 - UPF0250 protein YpsIP31758_2953 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=Yp... Y1085_YERPN - UPF0250 protein YPN_1085 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=YPN_1085 PE=3 SV=1 gi\|149365499, gi... - gi\|149365499\|ref\|ZP_01887534.1\| hypothetical protein YPE_0664 [Yersinia pestis CA88-4125], gi\|149291... Y2653_YERPP - UPF0250 protein YPDSF_2653 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_2653 PE=3 SV=1 Y2600_YERPE - UPF0250 protein YPO2600/y1174/YP_1113 OS=Yersinia pestis GN=YPO2600 PE=3 SV=1 gi\|89102291, gi\|... - gi\|89102291\|ref\|ZP_01174936.1\| COG2921: Uncharacterized conserved protein [Yersinia pestis biovar Or... gi\|45435802, gi\|... - gi\|45440943\|ref\|NP_992482.1\| hypothetical protein YP_1113 [Yersinia pestis biovar Microtus str. 9100... gi\|22125077, gi\|... - gi\|22125077\|ref\|NP_668500.1\| hypothetical protein y1174 [Yersinia pestis KIM], gi\|21957930\|gb\|AAM847... gi\|16122813, gi\|... - gi\|218929681\|ref\|YP_002347556.1\| hypothetical protein YPO2600 [Yersinia pestis CO92], gi\|16122813\|re... Y1093_YERPS - UPF0250 protein YPTB1093 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB1093 PE=3... Y1093_YERPS - UPF0250 protein YPTB1093 OS=Yersinia pseudotuberculosis GN=YPTB1093 PE=3 SV=1 gi\|167399624, gi... - gi\|167399624\|ref\|ZP_02305148.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166206303, gi... - gi\|166212372\|ref\|ZP_02238407.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167057690, gi... - gi\|167423520\|ref\|ZP_02315273.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|167422548, gi... - gi\|167422548\|ref\|ZP_02314301.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... Y1150_YERPB - UPF0250 protein YPTS_1150 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_1150 PE=... Y3025_YERPY - UPF0250 protein YPK_3025 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_3025 PE=3... gi\|229694512, gi... - gi\|229838146\|ref\|ZP_04458305.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi...	131.0	[0..6]	[92..1]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTINSDAKL KDLLEFPCSF TYKVMGHAKP ELPELVLEVI QRHAPGDYSP KVKPSAKGNY  60
   61 HSVSINITAT SIEQVETLYK ELGEIDIVRM VL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	1rwuA
Description:	Solution structure of conserved protein YbeD from E. coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits