YRC Public Data Repository - Protein Structure Prediction

Protein:	Y1033_PYRHO, YA3...
Organism:	Pyrococcus horikoshii
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y1033_PYRHO, YA3....

Description	E-value	Query Range	Subject Range
Y875_PYRAB - UPF0310 protein PYRAB08750 OS=Pyrococcus abyssi GN=PYRAB08750 PE=3 SV=1 Y875_PYRAB - UPF0310 protein PYRAB08750 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB08750 PE=3 SV=1	196.0	[0..1]	[144..1]
Y3206_RHILO, YW0... - (Q98GR7) Hypothetical UPF0310 protein msl3206, UPF0310 protein msl3206 OS=Rhizobium loti GN=msl3206 ... Y3206_RHILO - UPF0310 protein msl3206 OS=Rhizobium loti (strain MAFF303099) GN=msl3206 PE=3 SV=2	188.0	[0..2]	[144..3]
Y2356_ARCFU - UPF0310 protein AF_2356 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 /... Y2356_ARCFU, YN5... - (O30314) Hypothetical UPF0310 protein AF2356, UPF0310 protein AF_2356 OS=Archaeoglobus fulgidus GN=A...	186.0	[0..1]	[143..1]
Y064_MYCVP - UPF0310 protein Mvan_0064 OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=Mvan_0064 PE=3 S...	185.0	[0..1]	[145..1]
gi\|119692210, gi... - gi\|92915059\|ref\|ZP_01283684.1\| Protein of unknown function DUF55 [Mycobacterium sp. KMS], gi\|9244085... gi\|92433788, gi\|... - gi\|92909326\|ref\|ZP_01278104.1\| Protein of unknown function DUF55 [Mycobacterium sp. JLS], gi\|9243378... gi\|108797036, gi... - gi\|108797036\|ref\|YP_637233.1\| hypothetical protein Mmcs_0055 [Mycobacterium sp. MCS], gi\|108767455\|g...	184.0	[0..1]	[144..1]
Y785_MYCGI - UPF0310 protein Mflv_0785 OS=Mycobacterium gilvum (strain PYR-GCK) GN=Mflv_0785 PE=3 SV=1	179.0	[0..1]	[144..1]
gi\|111611605, gi... - gi\|121611137\|ref\|YP_998944.1\| hypothetical protein Veis_4221 [Verminephrobacter eiseniae EF01-2], gi...	179.0	[0..1]	[145..3]
gi\|126179424, gi... - gi\|126179424\|ref\|YP_001047389.1\| hypothetical protein Memar_1478 [Methanoculleus marisnigri JR1], gi...	177.0	[0..1]	[143..18]
gi\|86356484, gi\|... - gi\|86356484\|ref\|YP_468376.1\| hypothetical protein RHE_CH00838 [Rhizobium etli CFN 42], gi\|86280586\|g...	177.0	[0..2]	[145..3]
YD82_METJA, Y138... - (Q58777) Hypothetical UPF0310 protein MJ1382, UPF0310 protein MJ1382 OS=Methanocaldococcus jannaschi... Y1382_METJA - UPF0310 protein MJ1382 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM ...	177.0	[0..1]	[143..1]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYWICITNR ENWEVIKRHN VWGVPKKHKN TLSRVKPGDK LVIYVRQEKD KEGNLLEPKI  60
   61 VGIYEVTSEP YVDFSRIFKP HRGGKETYPY RVKIKPIKIG EINFKPLIND LKFIKNKKRW 120
  121 SMHFFGKAMR ELPEEDYKLI EKLLL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.522879
Match:	1wmmA
Description:	Crystal structure of PH1033 from Pyrococcus horikoshii Ot3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits