YRC Public Data Repository - Protein Structure Prediction

Protein:	Y1042_SULSO, YA4...
Organism:	Sulfolobus solfataricus
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y1042_SULSO, YA4....

Description	E-value	Query Range	Subject Range
Y949_SULTO - UPF0201 protein ST0949 OS=Sulfolobus tokodaii GN=ST0949 PE=3 SV=1 Y949_SULTO - UPF0201 protein STK_09490 OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN...	174.0	[0..1]	[144..1]
Y1285_SULAC - UPF0201 protein Saci_1285 OS=Sulfolobus acidocaldarius GN=Saci_1285 PE=3 SV=1 Y1285_SULAC - UPF0201 protein Saci_1285 OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBR...	158.0	[0..1]	[144..1]
Y1751_AERPE - UPF0201 protein APE_1751 OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 10013... YH51_AERPE, Y175... - (Q9YB44) Hypothetical UPF0201 protein APE1751, UPF0201 protein APE_1751 OS=Aeropyrum pernix GN=APE_1...	155.0	[0..2]	[143..8]
Y1632_PYRAE - UPF0201 protein PAE1632 OS=Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / N... Y1632_PYRAE, YG3... - (Q8ZWT2) Hypothetical UPF0201 protein PAE1632, UPF0201 protein PAE1632 OS=Pyrobaculum aerophilum GN=...	152.0	[0..2]	[144..1]
gi\|110605026, gi... - gi\|110605026\|ref\|ZP_01393073.1\| uncharacterized protein conserved in archaea [Thermofilum pendens Hr...	152.0	[0..2]	[140..17]
Y973_PYRAB - UPF0201 protein PYRAB09730 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB09730 PE=3 SV=1 Y973_PYRAB - UPF0201 protein PYRAB09730 OS=Pyrococcus abyssi GN=PYRAB09730 PE=3 SV=1	150.0	[0..3]	[137..7]
Y1335_PYRKO - UPF0201 protein TK1335 OS=Pyrococcus kodakaraensis GN=TK1335 PE=3 SV=1 Y1335_THEKO - UPF0201 protein TK1335 OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK13...	146.0	[0..3]	[137..7]
Y1297_PYRFU, YC9... - (P58830) Hypothetical UPF0201 protein PF1297, UPF0201 protein PF1297 OS=Pyrococcus furiosus GN=PF129... Y1297_PYRFU - UPF0201 protein PF1297 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF1...	146.0	[0..3]	[137..9]
YA10_PYRHO, Y101... - (O58738) Hypothetical UPF0201 protein PH1010, UPF0201 protein PH1010 OS=Pyrococcus horikoshii GN=PH1... Y1010_PYRHO - UPF0201 protein PH1010 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 10...	144.0	[0..3]	[137..7]
gi\|56295598 - gi\|56295598\|emb\|CAH04839.1\| hypothetical Dephospho-CoA kinase (CoaE) [uncultured archaeon] gi\|110620821, gi... - gi\|147920769\|ref\|YP_685425.1\| hypothetical protein RCIX710 [uncultured methanogenic archaeon RC-I], ...	138.0	[0..2]	[141..181]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKVMVVAEV RPSEDVNKVL SAISNFFDFE KMNTRKEGII DILVLEARTL KSLLKFHRVL  60
   61 RNERILDSAR KYLMKGIEGN TIAFMIHKQA AAVGVLSFVD SDKESPLGAI KFYIEYQNPK 120
  121 EIVDWLAPKT AHGVPLWDNP VPPDV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.154902
Match:	2nwuA
Description:	No description for 2nwuA was found.

Predicted functions:

Term	Confidence	Notes
structural molecule activity	0.662519135971	bayes_pls_golite062009
structural constituent of ribosome	0.652676036630401	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: