YRC Public Data Repository - Protein Structure Prediction

Protein:	YD82_METJA, Y138...
Organism:	Methanocaldococcus jannaschii
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YD82_METJA, Y138....

Description	E-value	Query Range	Subject Range
Y2356_ARCFU - UPF0310 protein AF_2356 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 /... Y2356_ARCFU, YN5... - (O30314) Hypothetical UPF0310 protein AF2356, UPF0310 protein AF_2356 OS=Archaeoglobus fulgidus GN=A...	193.0	[0..1]	[144..1]
gi\|158429310, gi... - gi\|2129050\|pir\|\|C64514 hypothetical protein MJECL36 - Methanococcus jannaschii plasmid pURB800, gi\|1... gi\|10954523, gi\|... - gi\|1500679\|gb\|AAC37105.1\| hypothetical protein MJ_ECL36 [Methanocaldococcus jannaschii DSM 2661], gi...	186.0	[0..1]	[141..4]
gi\|126179424, gi... - gi\|126179424\|ref\|YP_001047389.1\| hypothetical protein Memar_1478 [Methanoculleus marisnigri JR1], gi...	185.0	[0..1]	[144..18]
Y3536_METJA - UPF0310 protein MJECL36 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM... YZ36_METJA, Y353... - (Q60257) Hypothetical UPF0310 protein MJECL36, UPF0310 protein MJECL36 OS=Methanocaldococcus jannasc...	184.0	[0..1]	[141..1]
gi\|88602789, gi\|... - gi\|88602789\|ref\|YP_502967.1\| hypothetical protein Mhun_1515 [Methanospirillum hungatei JF-1], gi\|881...	182.0	[0..1]	[142..1]
Y875_PYRAB - UPF0310 protein PYRAB08750 OS=Pyrococcus abyssi GN=PYRAB08750 PE=3 SV=1 Y875_PYRAB - UPF0310 protein PYRAB08750 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB08750 PE=3 SV=1	181.0	[0..1]	[145..1]
Y1033_PYRHO, YA3... - (O58764) Hypothetical UPF0310 protein PH1033, UPF0310 protein PH1033 OS=Pyrococcus horikoshii GN=PH1... Y1033_PYRHO - UPF0310 protein PH1033 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 10...	179.0	[0..1]	[145..1]
Y3206_RHILO, YW0... - (Q98GR7) Hypothetical UPF0310 protein msl3206, UPF0310 protein msl3206 OS=Rhizobium loti GN=msl3206 ... Y3206_RHILO - UPF0310 protein msl3206 OS=Rhizobium loti (strain MAFF303099) GN=msl3206 PE=3 SV=2	176.0	[0..2]	[145..3]
Y064_MYCVP - UPF0310 protein Mvan_0064 OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=Mvan_0064 PE=3 S...	171.0	[0..1]	[145..1]

Back

Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYWLCITNE DNWKVIKDKK IWGVAERHKN TINKVKVGDK LIIYEIQRSG KDYKPPYIRG  60
   61 VYEVVSEVYK DSSKIFKPTP RNPNEKFPYR VKLKEVKVFV PPINFKDLIP KLKFITNKKK 120
  121 WSGHLMGKAM REIPEEDYKL IIEAKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.522879
Match:	2p5dA
Description:	No description for 2p5dA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits