Protein: | YDIJ_ECOLI |
Organism: | Escherichia coli |
Length: | 1018 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDIJ_ECOLI.
Description | E-value | Query Range |
Subject Range |
|
804.0 | [0..1] | [1018..1] |
|
803.0 | [0..1] | [1018..1] |
|
803.0 | [0..1] | [1018..1] |
|
802.0 | [0..1] | [1018..1] |
|
802.0 | [0..1] | [1018..1] |
|
802.0 | [0..1] | [1018..1] |
|
802.0 | [0..1] | [1018..1] |
|
801.0 | [0..1] | [1018..1] |
|
800.0 | [0..1] | [1018..1] |
|
800.0 | [0..1] | [1018..1] |
Region A: Residues: [1-544] |
1 11 21 31 41 51 | | | | | | 1 MIPQISQAPG VVQLVLNFLQ ELEQQGFTGD TATSYADRLT MSTDNSIYQL LPDAVVFPRS 60 61 TADVALIARL AAQERYSSLI FTPRGGGTGT NGQALNQGII VDMSRHMNRI IEINPEEGWV 120 121 RVEAGVIKDQ LNQYLKPFGY FFAPELSTSN RATLGGMINT DASGQGSLVY GKTSDHVLGV 180 181 RAVLLGGDIL DTQPLPVELA ETLGKSNTTI GRIYNTVYQR CRQQRQLIID NFPKLNRFLT 240 241 GYDLRHVFND EMTEFDLTRI LTGSEGTLAF ITEARLDITR LPKVRRLVNV KYDSFDSALR 300 301 NAPFMVEARA LSVETVDSKV LNLAREDIVW HSVSELITDV PDQEMLGLNI VEFAGDDEAL 360 361 IDERVNALCA RLDELIASHQ AGVIGWQVCR ELAGVERIYA MRKKAVGLLG NAKGAAKPIP 420 421 FAEDTCVPPE HLADYIAEFR ALLDSHGLSY GMFGHVDAGV LHVRPALDMC DPQQEILMKQ 480 481 ISDDVVALTA KYGGLLWGEH GKGFRAEYSP AFFGEELFAE LRKVKAAFDP HNRLNPGKIC 540 541 PPEG |
Detection Method: | |
Confidence: | 49.0 |
Match: | 2uuuA |
Description: | No description for 2uuuA was found. |
Region A: Residues: [545-704] |
1 11 21 31 41 51 | | | | | | 1 LDAPMMKVDA VKRGTFDRQI PIAVRQQWRG AMECNGNGLC FNFDARSPMC PSMKITQNRI 60 61 HSPKGRATLV REWLRLLADR GVDPLKLEQE LPESGVSLRT LIARTRNSWH ANKGEYDFSH 120 121 EVKEAMSGCL ACKACSTQCP IKIDVPEFRS RFLQLYHTRY |
Detection Method: | |
Confidence: | 4.69897 |
Match: | 1kf6B |
Description: | Fumarate reductase; Fumarate reductase iron-sulfur protein, N-terminal domain |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
oxidoreductase activity, acting on the CH-CH group of donors | 5.01242526509414 | bayes_pls_golite062009 |
succinate dehydrogenase activity | 3.51223072046447 | bayes_pls_golite062009 |
oxidoreductase activity | 2.72328759803842 | bayes_pls_golite062009 |
succinate dehydrogenase (ubiquinone) activity | 2.13229308925208 | bayes_pls_golite062009 |
oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor | 2.13229308925208 | bayes_pls_golite062009 |
catalytic activity | 1.35682608895635 | bayes_pls_golite062009 |
binding | 0.629227080432741 | bayes_pls_golite062009 |
Region A: Residues: [705-779] |
1 11 21 31 41 51 | | | | | | 1 LRPLRDHLVA TVESYAPLMA RAPKTFNFFI NQPLVRKLSE KHIGMVDLPL LSVPSLQQQM 60 61 VGHRSANMTL EQLES |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.524 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.796 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
View | Download | 0.514 | a.56.1 | CO dehydrogenase ISP C-domain like |
View | Download | 0.444 | a.36.1 | Signal peptide-binding domain |
View | Download | 0.470 | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
Region A: Residues: [780-857] |
1 11 21 31 41 51 | | | | | | 1 LNAEQKARTV LVVQDPFTSY YDAQVVADFV RLVEKLGFQP VLLPFSPNGK AQHIKGFLNR 60 61 FAKTAKKTAD FLNRMAKL |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [858-1018] |
1 11 21 31 41 51 | | | | | | 1 GMPMVGVDPA LVLCYRDEYK LALGEERGEF NVLLANEWLA SALESQPVAT VSGESWYFFG 60 61 HCTEVTALPG APAQWAAIFA RFGAKLENVS VGCCGMAGTY GHEAKNHENS LGIYELSWHQ 120 121 AMQRLPRNRC LATGYSCRSQ VKRVEGTGVR HPVQALLEII K |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.503 | 0.116 | FAD binding | c.23.1 | CheY-like |
View | Download | 0.676 | 0.090 | FAD binding | c.30.1 | PreATP-grasp domain |
View | Download | 0.722 | 0.019 | FAD binding | c.78.2 | Aspartate/glutamate racemase |
View | Download | 0.654 | N/A | N/A | c.78.2 | Aspartate/glutamate racemase |
View | Download | 0.513 | N/A | N/A | c.78.2 | Aspartate/glutamate racemase |