YRC Public Data Repository - Protein Structure Prediction

Protein:	YECF_ECOLI
Organism:	Escherichia coli
Length:	74 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YECF_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|238794050, gi... - gi\|77979882\|ref\|ZP_00835298.1\| hypothetical protein YintA_01000378 [Yersinia intermedia ATCC 29909],...	122.0	[0..1]	[74..1]
gi\|77975630, gi\|... - gi\|77975630\|ref\|ZP_00831164.1\| hypothetical protein YfreA_01000274 [Yersinia frederiksenii ATCC 3364...	121.0	[0..1]	[74..1]
gi\|157161387, gi... - gi\|75195975\|ref\|ZP_00706045.1\| hypothetical protein EcolH_01001779 [Escherichia coli HS], gi\|1571613...	116.0	[0..1]	[74..1]
gi\|227112457 - gi\|227112457\|ref\|ZP_03826113.1\| hypothetical protein PcarbP_05812 [Pectobacterium carotovorum subsp.... gi\|49612333, gi\|... - gi\|50121807\|ref\|YP_050974.1\| hypothetical protein ECA2883 [Pectobacterium atrosepticum SCRI1043], gi... gi\|227329598 - gi\|227329598\|ref\|ZP_03833622.1\| hypothetical protein PcarcW_20533 [Pectobacterium carotovorum subsp....	115.0	[0..1]	[74..1]
gi\|195634040, gi... - gi\|195634040\|gb\|EDX52392.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205350598, gi... - gi\|205350598\|gb\|EDZ37229.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205336378, gi... - gi\|205336378\|gb\|EDZ23142.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|197288093, gi... - gi\|197288093\|gb\|EDY27480.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|194470429, gi... - gi\|194470429\|ref\|ZP_03076413.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|194410132, gi... - gi\|194451828\|ref\|YP_002046000.1\| hypothetical protein SeHA_C2164 [Salmonella enterica subsp. enteric... gi\|194445648, gi... - gi\|194445648\|ref\|YP_002041214.1\| hypothetical protein SNSL254_A2111 [Salmonella enterica subsp. ente... gi\|205340689, gi... - gi\|205340689\|gb\|EDZ27453.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205331858, gi... - gi\|205331858\|gb\|EDZ18622.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205328403, gi... - gi\|205328403\|gb\|EDZ15167.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|167552823, gi... - gi\|205322662\|gb\|EDZ10501.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|161362854, gi... - gi\|161613490\|ref\|YP_001587455.1\| hypothetical protein SPAB_01207 [Salmonella enterica subsp. enteric... gi\|16503192, gi\|... - gi\|25512971\|pir\|\|AG0749 conserved hypothetical protein STY2157 [imported] - Salmonella enterica subs... gi\|213650335 - gi\|213650335\|ref\|ZP_03380388.1\| hypothetical protein SentesTy_25665 [Salmonella enterica subsp. ente... gi\|16765287, gi\|... - gi\|16765287\|ref\|NP_460902.1\| hypothetical protein STM1949 [Salmonella typhimurium LT2], gi\|16420483\|... gi\|213426357 - gi\|213426357\|ref\|ZP_03359107.1\| hypothetical protein SentesTyphi_12424 [Salmonella enterica subsp. e... gi\|213053514 - gi\|213053514\|ref\|ZP_03346392.1\| hypothetical protein Salmoneentericaenterica_11707 [Salmonella enter... gi\|213027991 - gi\|213027991\|ref\|ZP_03342438.1\| hypothetical protein Salmonelentericaenterica_39045 [Salmonella ente... gi\|224468077, gi... - gi\|224583550\|ref\|YP_002637348.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica s... gi\|213999634 - gi\|213999634\|ref\|ZP_03410369.1\| hypothetical protein Salmonellentericaenterica_02501 [Salmonella ent... gi\|29141413, gi\|... - gi\|29141413\|ref\|NP_804755.1\| hypothetical protein t0927 [Salmonella enterica subsp. enterica serovar... gi\|213981564 - gi\|213981564\|ref\|ZP_03408823.1\| hypothetical protein Salmonellaentericaenterica_47122 [Salmonella en... gi\|16760895 - gi\|16760895\|ref\|NP_456512.1\| hypothetical protein STY2157 [Salmonella enterica subsp. enterica serov... gi\|213857579 - gi\|213857579\|ref\|ZP_03384550.1\| hypothetical protein SentesT_20771 [Salmonella enterica subsp. enter... gi\|197362062, gi... - gi\|197362062\|ref\|YP_002141699.1\| hypothetical protein SSPA0858 [Salmonella enterica subsp. enterica ... gi\|197263756, gi... - gi\|197263756\|ref\|ZP_03163830.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197214810, gi... - gi\|197251107\|ref\|YP_002146074.1\| hypothetical protein SeAg_B1171 [Salmonella enterica subsp. enteric... gi\|194735230, gi... - gi\|194735230\|ref\|YP_002114982.1\| hypothetical protein SeSA_A2105 [Salmonella enterica subsp. enteric... gi\|207856537, gi... - gi\|207856537\|ref\|YP_002243188.1\| hypothetical protein SEN1058 [Salmonella enterica subsp. enterica s... gi\|204320049, gi... - gi\|204931005\|ref\|ZP_03221831.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|238912478 - gi\|238912478\|ref\|ZP_04656315.1\| hypothetical protein SentesTe_15275 [Salmonella enterica subsp. ente... gi\|199601779, gi... - gi\|200389334\|ref\|ZP_03215945.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|198242378, gi... - gi\|198242378\|ref\|YP_002215137.1\| hypothetical protein SeD_A1294 [Salmonella enterica subsp. enterica... gi\|62128156, gi\|... - gi\|62180523\|ref\|YP_216940.1\| hypothetical protein SC1953 [Salmonella enterica subsp. enterica serova... gi\|56413136, gi\|... - gi\|56413136\|ref\|YP_150211.1\| hypothetical protein SPA0920 [Salmonella enterica subsp. enterica serov... lcl\|NC_016856.1_... - [gene=yecF] [protein=hypothetical protein] [protein_id=YP_005237916.1] [location=2050772..2050996]	115.0	[0..1]	[74..1]
gi\|25499432, gi\|... - pir\|\|F85808 hypothetical protein yecF [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|217328833, gi... - gi\|217328833\|ref\|ZP_03444914.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|189370211, gi... - gi\|189370211\|gb\|EDU88627.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|12516013, gi\|... - gi\|15802350\|ref\|NP_288376.1\| hypothetical protein Z3003 [Escherichia coli O157:H7 EDL933], gi\|125160... gi\|13362121, gi\|... - gi\|15831907\|ref\|NP_310680.1\| hypothetical protein ECs2653 [Escherichia coli O157:H7], gi\|13362121\|db... gi\|13362121, gi\|... - gi\|15831907\|ref\|NP_310680.1\| hypothetical protein ECs2653 [Escherichia coli O157:H7 str. Sakai], gi\|...	114.0	[0..1]	[74..1]
gi\|36785375, gi\|... - gi\|37525946\|ref\|NP_929290.1\| hypothetical protein plu2029 [Photorhabdus luminescens subsp. laumondii...	114.0	[0..1]	[74..1]
gi\|190906436, gi... - gi\|75239187\|ref\|ZP_00723164.1\| hypothetical protein EcolF_01003215 [Escherichia coli F11], gi\|191173...	114.0	[0..1]	[74..1]
gi\|238799116, gi... - gi\|77960268\|ref\|ZP_00824148.1\| hypothetical protein YmolA_01003450 [Yersinia mollaretii ATCC 43969],...	105.0	[0..1]	[74..1]
gi\|238714369, gi... - gi\|77957962\|ref\|ZP_00822005.1\| hypothetical protein YberA_01001843 [Yersinia bercovieri ATCC 43970],...	105.0	[0..1]	[74..1]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTPDFSTAE NNQELANEVS CLKAMLTLML QAMGQADAGR VMLKMEKQLA LIEDETQAAV  60
   61 FSKTVKQIKQ AYRQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.894	a.8.11	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits