YRC Public Data Repository - Protein Structure Prediction

Protein:	HIUH_PSEAE, YF18...
Organism:	Pseudomonas aeruginosa
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HIUH_PSEAE, YF18....

Description	E-value	Query Range	Subject Range
gi\|49077538 - gi\|49077538\|gb\|AAT49690.1\| PA1518 [synthetic construct]	5.0E-52	[1..126]	[1..126]
gi\|194545599, gi... - gi\|254234614\|ref\|ZP_04927937.1\| conserved hypothetical protein [Pseudomonas aeruginosa C3719], gi\|19... gi\|116049462, gi... - gi\|116049462\|ref\|YP_791735.1\| putative transthyretin family protein [Pseudomonas aeruginosa UCBPP-PA...	1.0E-51	[1..126]	[1..126]
gi\|107100949 - gi\|107100949\|ref\|ZP_01364867.1\| hypothetical protein PaerPA_01001979 [Pseudomonas aeruginosa PACS2] gi\|84328432 - gi\|84328432\|ref\|ZP_00976439.1\| COG2351: Transthyretin-like protein [Pseudomonas aeruginosa 2192]	3.0E-48	[10..126]	[1..117]
gi\|94415074 - gi\|94415074\|ref\|ZP_01294923.1\| hypothetical protein PaerP_01003182 [Pseudomonas aeruginosa PA7]	7.0E-48	[10..126]	[1..117]
gi\|53727731 - gi\|53727731\|ref\|ZP_00139144.2\| COG2351: Transthyretin-like protein [Pseudomonas aeruginosa UCBPP-PA1... gi\|84321704 - gi\|84321704\|ref\|ZP_00970058.1\| COG2351: Transthyretin-like protein [Pseudomonas aeruginosa C3719]	8.0E-48	[10..126]	[1..117]
gi\|63255761, gi\|... - gi\|66045054\|ref\|YP_234895.1\| transthyretin [Pseudomonas syringae pv. syringae B728a], gi\|63255761\|gb...	4.0E-46	[10..126]	[1..117]
gi\|68346014, gi\|... - gi\|70731715\|ref\|YP_261457.1\| transthyretin family protein [Pseudomonas fluorescens Pf-5], gi\|6834601...	4.0E-46	[10..126]	[1..117]
gi\|83748884, gi\|... - gi\|83748884\|ref\|ZP_00945895.1\| Urate oxidase [Ralstonia solanacearum UW551], gi\|83724450\|gb\|EAP71617...	8.0E-46	[5..126]	[39..160]
gi\|26990976, gi\|... - gi\|26990976\|ref\|NP_746401.1\| transthyretin family protein [Pseudomonas putida KT2440], gi\|24986001\|g... tr\|I7C2R9\|I7C2R9... - 5-hydroxyisourate hydrolase OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_0085 PE=3 SV=1 tr\|E4RC86\|E4RC86... - 5-hydroxyisourate hydrolase OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIRD1_1570 PE=3 SV=1 gi\|82739341, gi\|... - gi\|82739341\|ref\|ZP_00902147.1\| transthyretin family protein [Pseudomonas putida F1], gi\|82713589\|gb\|...	8.0E-46	[10..126]	[1..117]
gi\|15141053, gi\|... - gi\|16264914\|ref\|NP_437706.1\| transthyretin-like protein [Sinorhizobium meliloti 1021], gi\|15141053\|e... gi\|25295910 - gi\|25295910\|pir\|\|F95987 conserved hypothetical protein, transthyretin-like protein SMb20872 [importe...	9.0E-46	[1..126]	[1..129]

Back

Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASGRPQPM GRLTTHVLDS AHGCPGHGIK IELYRVEGQQ LELIATTLTN HDGRCDQPVL  60
   61 QGEDFRPGVY QLVFNAGDYY RARGVQLPEP AFLDQVVLRF GIASADDHYH VPLLISPYSY 120
  121 STYRGS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.045757
Match:	2h0eA
Description:	No description for 2h0eA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits