YRC Public Data Repository - Protein Structure Prediction

Protein:	YFHM_ECOLI
Organism:	Escherichia coli
Length:	1653 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFHM_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|15803047, gi\|... - gi\|15803047\|ref\|NP_289077.1\| hypothetical protein Z3787 [Escherichia coli O157:H7 EDL933], gi\|125169... gi\|254593870, gi... - gi\|254794470\|ref\|YP_003079307.1\| hypothetical protein ECSP_3464 [Escherichia coli O157:H7 str. TW143... gi\|209162055, gi... - gi\|209400655\|ref\|YP_002271994.1\| alpha-2-macroglobulin domain protein [Escherichia coli O157:H7 str.... gi\|208739338, gi... - gi\|208819215\|ref\|ZP_03259535.1\| alpha-2-macroglobulin domain protein [Escherichia coli O157:H7 str. ... gi\|208735711, gi... - gi\|208814434\|ref\|ZP_03255763.1\| alpha-2-macroglobulin domain protein [Escherichia coli O157:H7 str. ... gi\|208726496, gi... - gi\|208806695\|ref\|ZP_03249032.1\| alpha-2-macroglobulin domain protein [Escherichia coli O157:H7 str. ... gi\|15832640, gi\|... - gi\|15832640\|ref\|NP_311413.1\| hypothetical protein ECs3386 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|217319415, gi... - gi\|217327048\|ref\|ZP_03443131.1\| alpha-2-macroglobulin domain protein [Escherichia coli O157:H7 str. ... gi\|187770622, gi... - gi\|187770622\|gb\|EDU34466.1\| alpha-2-macroglobulin domain protein [Escherichia coli O157:H7 str. EC41... gi\|189362334, gi... - gi\|189362334\|gb\|EDU80753.1\| alpha-2-macroglobulin domain protein [Escherichia coli O157:H7 str. EC44... gi\|168761134, gi... - gi\|189368485\|gb\|EDU86901.1\| alpha-2-macroglobulin domain protein [Escherichia coli O157:H7 str. EC45... gi\|189356606, gi... - gi\|189356606\|gb\|EDU75025.1\| alpha-2-macroglobulin domain protein [Escherichia coli O157:H7 str. EC44... gi\|195936666 - gi\|195936666\|ref\|ZP_03082048.1\| hypothetical protein EscherichcoliO157_09420 [Escherichia coli O157:... gi\|168798895, gi... - gi\|189378587\|gb\|EDU97003.1\| alpha-2-macroglobulin domain protein [Escherichia coli O157:H7 str. EC50... gi\|189372366, gi... - gi\|189372366\|gb\|EDU90782.1\| alpha-2-macroglobulin domain protein [Escherichia coli O157:H7 str. EC86... gi\|168778490, gi... - gi\|189003354\|gb\|EDU72340.1\| alpha-2-macroglobulin domain protein [Escherichia coli O157:H7 str. EC40... gi\|188017057, gi... - gi\|188017057\|gb\|EDU55179.1\| alpha-2-macroglobulin domain protein [Escherichia coli O157:H7 str. EC41... gi\|15832640, gi\|... - gi\|15832640\|ref\|NP_311413.1\| hypothetical protein ECs3386 [Escherichia coli O157:H7], gi\|13362856\|db... gi\|209763332, gi... - pir\|\|F85896 hypothetical protein Z3787 [imported] - Escherichia coli (strain O157:H7, substrain EDL...	1220.0	[0..1]	[1653..1]
gi\|91211847, gi\|... - gi\|91211847\|ref\|YP_541833.1\| lipoprotein YfhM precursor [Escherichia coli UTI89], gi\|91073421\|gb\|ABE... gi\|117624749, gi... - gi\|117624749\|ref\|YP_853662.1\| putative lipoprotein YfhM [Escherichia coli APEC O1], gi\|115513873\|gb\|... gi\|218366215, gi... - gi\|218559446\|ref\|YP_002392359.1\| hypothetical protein ECS88_2696 [Escherichia coli S88], gi\|21836621... gi\|226901396, gi... - gi\|237705030\|ref\|ZP_04535511.1\| lipoprotein YfhM [Escherichia sp. 3_2_53FAA], gi\|226901396\|gb\|EEH876...	1220.0	[0..1]	[1653..1]
gi\|110642685, gi... - gi\|110642685\|ref\|YP_670415.1\| lipoprotein YfhM precursor [Escherichia coli 536], gi\|110344277\|gb\|ABG... gi\|75240455, gi\|... - gi\|75240455\|ref\|ZP_00724389.1\| COG2373: Large extracellular alpha-helical protein [Escherichia coli ...	1219.0	[0..1]	[1653..1]
gi\|124498688, gi... - gi\|124531242\|ref\|ZP_01701584.1\| alpha-2-macroglobulin domain protein [Escherichia coli B], gi\|124498... gi\|157161995, gi... - gi\|75196537\|ref\|ZP_00706607.1\| COG2373: Large extracellular alpha-helical protein [Escherichia coli ... gi\|170019197, gi... - gi\|170019197\|ref\|YP_001724151.1\| alpha-2-macroglobulin domain-containing protein [Escherichia coli A...	1219.0	[0..1]	[1653..1]
gi\|227887555, gi... - gi\|227887555\|ref\|ZP_04005360.1\| alpha-2-macroglobulin domain protein [Escherichia coli 83972], gi\|22... gi\|26248885, gi\|... - gi\|26248885\|ref\|NP_754925.1\| lipoprotein yfhM precursor [Escherichia coli CFT073], gi\|26109291\|gb\|AA...	1218.0	[0..1]	[1653..1]
gi\|75515859, gi\|... - gi\|75515859\|ref\|ZP_00737994.1\| COG2373: Large extracellular alpha-helical protein [Escherichia coli ...	1217.0	[0..1]	[1653..1]
gi\|192958396, gi... - gi\|75237734\|ref\|ZP_00721750.1\| COG2373: Large extracellular alpha-helical protein [Escherichia coli ...	1214.0	[0..1]	[1653..1]
gi\|194432030, gi... - gi\|83570740\|ref\|ZP_00922183.1\| COG2373: Large extracellular alpha-helical protein [Shigella dysenter...	1213.0	[0..1]	[1653..1]
gi\|190902274, gi... - gi\|75229148\|ref\|ZP_00715720.1\| COG2373: Large extracellular alpha-helical protein [Escherichia coli ...	1212.0	[0..1]	[1653..1]
gi\|73856523, gi\|... - gi\|74313046\|ref\|YP_311465.1\| hypothetical protein SSON_2602 [Shigella sonnei Ss046], gi\|73856523\|gb\|...	1212.0	[0..1]	[1653..1]

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Predicted Domain #1

Region A:
Residues: [1-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLRVAACM LMLALAGCDN NDNAPTAVKK DAPSEVTKAA SSENASSAKL SVPERQKLAQ  60
   61 QSAGKVLTLL DLSEVQLDGA ATLVLTFSIP LDPDQDFSRV IHVVDKKSGK VDGAWELSDN 120
  121 LKELRLRHLE PKRDLIVTIG KEVKALNNAT FSKDYEKTIT TRDIQPSVGF ASRGSLLPGK 180
  181 VVEGLPVMAL NVNNVDVNFF RVKPESLPAF ISQWEYRNSL ANWQSDKLLQ MADLVYTGRF 240
  241 DLNPARNTRE KLLLPLGDIK PLQQAGVYLA VMNQAGRYDY SN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.04
Match:	2ha1A
Description:	No description for 2ha1A was found.

Predicted Domain #2

Region A:
Residues: [283-1653]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PATLFTLSDI GVSAHRYHNR LDIFTQSLEN GAAQQGIEVS LLNEKGQTLT QATSDAQGHV  60
   61 QLENDKNAAL LLARKDGQTT LLDLKLPALD LAEFNIAGAP GYSKQFFMFG PRDLYRPGET 120
  121 VILNGLLRDA DGKALPNQPI KLDVIKPDGQ VLRSVVSQPE NGLYHFTWPL DSNAATGMWH 180
  181 IRANTGDNQY RMWDFHVEDF MPERMALNLT GEKTPLTPKD EVKFSVVGYY LYGAPANGNT 240
  241 LQGQLFLRPL REAVSALPGF EFGDIAAENL SRTLDEVQLT LDDKGRGEVS TESQWKETHS 300
  301 PLQVIFQGSL LESGGRPVTR RAEQAIWPAD ALPGIRPQFA SKSVYDYRTD STVKQPIVDE 360
  361 GSNAAFDIVY SDAQGVKKAV SGLQVRLIRE RRDYYWNWSE DEGWQSQFDQ KDLIENEQTL 420
  421 DLKADETGKV SFPVEWGAYR LEVKAPNEAV SSVRFWAGYS WQDNSDGSGA VRPDRVTLKL 480
  481 DKASYRPGDT IKLHIAAPTA GKGYAMVESS EGPLWWQEID VRAQGLDLTI PVDKTWNRHD 540
  541 LYLSTLVVRP GDKSRSATPK RAVGVLHLPL GDENRRLDLA LETPAKMRPN QPLTVKIKAS 600
  601 TKNGEKPKQV NVLVSAVDSG VLNITDYVTP DPWQAFFGQK RYGADIYDIY GQVIEGQGRL 660
  661 AALRFGGDGD ELKRGGKPPV NHVNIVVQQA LPVTLNEQGE GSVTLPIGDF NGELRVMAQA 720
  721 WTADDFGSNE SKVIVAAPVI AELNMPRFMA SGDTSRLTLD ITNLTDKPQK LNVALTASGL 780
  781 LELVSDSPAA VELAPGVRTT LFIPVRALPG YGDGEIQATI SGLALPGETV ADQHKQWKIG 840
  841 VRPAFPAQTV NYGTALQPGE TWAIPADGLQ NFSPVTLEGQ LLLSGKPPLN IARYIKELKA 900
  901 YPYGCLEQTA SGLFPSLYTN AAQLQALGIK GDSDEKRRAS VDIGISRLLQ MQRDNGGFAL 960
  961 WDKNGDEEYW LTAYVMDFLV RAGEQGYSVP TDAINRGNER LLRYLQDPGM MSIPYADNLK1020
 1021 ASKFAVQSYA ALVLARQQKA PLGALREIWE HRADAASGLP LLQLGVALKT MGDATRGEEA1080
 1081 IALALKTPRN SDERIWLGDY GSSLRDNALM LSLLEENKLL PDEQYTLLNT LSQQAFGERW1140
 1141 LSTQESNALF LAARTIQDLP GKWQAQTSFS AEQLTGEKAQ NSNLNSDQLV TLQVSNSGDQ1200
 1201 PLWLRMDASG YPQSAPLPAN NVLQIERHIL GTDGKSKSLD SLRSGDLVLV WLQVKASNSV1260
 1261 PDALVVDLLP AGLELENQNL ANGSASLEQS GGEVQNLLNQ MQQASIKHIE FRDDRFVAAV1320
 1321 AVDEYQPVTL VYLARAVTPG TYQVPQPMVE SMYVPQWRAT GAAEDLLIVR P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2pn5A
Description:	No description for 2pn5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits