YRC Public Data Repository - Protein Structure Prediction

Protein:	YH70_SYNY3, Y177...
Organism:	Synechocystis sp. PCC 6803
Length:	585 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YH70_SYNY3, Y177....

Description	E-value	Query Range	Subject Range
gi\|67923858, gi\|... - gi\|67923858\|ref\|ZP_00517317.1\| ABC-1 [Crocosphaera watsonii WH 8501], gi\|67854287\|gb\|EAM49587.1\| ABC...	414.0	[0..1]	[585..1]
gi\|37523747, gi\|... - gi\|37523747\|ref\|NP_927124.1\| hypothetical protein glr4178 [Gloeobacter violaceus PCC 7421], gi\|35214...	398.0	[0..2]	[582..10]
gi\|186463273, gi... - gi\|23130618\|ref\|ZP_00112431.1\| COG0661: Predicted unusual protein kinase [Nostoc punctiforme PCC 731...	385.0	[0..28]	[565..18]
gi\|17232007, gi\|... - gi\|17232007\|ref\|NP_488555.1\| hypothetical protein alr4515 [Nostoc sp. PCC 7120], gi\|17133651\|dbj\|BAB... gi\|25329173 - pir\|\|AC2370 hypothetical protein alr4515 [imported] - Nostoc sp. (strain PCC 7120)	385.0	[0..28]	[555..34]
gi\|110167981, gi... - gi\|71675787\|ref\|ZP_00673531.1\| ABC-1 [Trichodesmium erythraeum IMS101], gi\|71671255\|gb\|EAO27921.1\| A...	383.0	[0..22]	[584..4]
gi\|75703312, gi\|... - gi\|75909587\|ref\|YP_323883.1\| hypothetical protein Ava_3381 [Anabaena variabilis ATCC 29413], gi\|7570...	382.0	[0..28]	[555..23]
gi\|22295969, gi\|... - gi\|22299785\|ref\|NP_683032.1\| hypothetical protein tlr2242 [Thermosynechococcus elongatus BP-1], gi\|2...	378.0	[0..5]	[585..26]
gi\|81168558, gi\|... - gi\|81299677\|ref\|YP_399885.1\| hypothetical protein Synpcc7942_0868 [Synechococcus elongatus PCC 7942]... gi\|56685640, gi\|... - gi\|56750681\|ref\|YP_171382.1\| hypothetical protein syc0672_c [Synechococcus elongatus PCC 6301], gi\|5...	361.0	[0..43]	[584..38]
UBIB_VIBPA - Probable ubiquinone biosynthesis protein UbiB OS=Vibrio parahaemolyticus GN=ubiB PE=3 SV=1 UBIB_VIBPA - Probable protein kinase UbiB OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=ubiB...	354.0	[0..42]	[577..6]
gi\|151938911, gi... - gi\|75856472\|ref\|ZP_00764100.1\| COG0661: Predicted unusual protein kinase [Vibrio sp. Ex25], gi\|25422...	352.0	[0..42]	[577..6]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSALSTKLEP TNSYSESLPP QRRSPLEAEG RYRWNRGNYS ITRRRIDIWG FVLTLLYQFW  60
   61 LNGKKWSYAG GYTEEKLQQR RRRQAKWIRE NLLSLGPTFI KVGQLFSTRS DL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [113-506]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPAEYVEELS KLQDEVPAFS YEQAAGIIEE ELGKPIAKLY RSFDPVPLAA ASLGQVHKAQ  60
   61 LHTGEDVVVK VQRPGLKKLF TIDLAILKKI AQYFQNHPKW GRGRDWNGIY EECCKILWQE 120
  121 TDYLREGRSA DTFRRNFRGE DWVKVPRVYW RYTSTQILTL EYLPGIKISH YDALEAAGLE 180
  181 RKELAQLGAR AYLFQLLNHG FFHADPHPGN LAVSPEAGEL IFYDFGMMGE ITPDTKNKLM 240
  241 DTLFGVAEKN AERIVNSLVA LGALKETEDM GPIRRSVQFL LDNFMDKPFE EQSITKISDD 300
  301 LYEIAYDQPF RFPATFTFVM RAFSTLEGVG KGLDPDFNFM AVAQPFALQI MNNSNGFNPA 360
  361 GNIMDELGRQ AVQVGNSALG LPRRIEDSLD RLDR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.39794
Match:	1omwA
Description:	G-protein coupled receptor kinase 2, N-terminal domain; G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1); G-protein coupled receptor kinase 2
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [507-585]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDIRVRVRST ETDRLLRRMG TMQMGTNYVL FTCALVLSAT LLFVNNYFMA AAVVLLMSLV  60
   61 PAFALWRLLK RLERQDRMF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits