YRC Public Data Repository - Protein Structure Prediction

Protein:	YMFK_ECOLI
Organism:	Escherichia coli
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMFK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|19483765, gi\|... - gi\|19549021\|ref\|NP_599066.1\| repressor [Enterobacteria phage SfV], gi\|19483765\|gb\|AAL89436.1\| repres...	159.0	[0..1]	[224..1]
gi\|82542851, gi\|... - gi\|82542851\|ref\|YP_406799.1\| putative phage repressor [Shigella boydii Sb227], gi\|81244262\|gb\|ABB649...	157.0	[0..1]	[224..1]
gi\|91073262, gi\|... - gi\|91211688\|ref\|YP_541674.1\| repressor protein [Escherichia coli UTI89], gi\|91073262\|gb\|ABE08143.1\| ... gi\|218559304, gi... - gi\|218559304\|ref\|YP_002392217.1\| Repressor protein CII [Escherichia coli S88], gi\|218366073\|emb\|CAR0... gi\|148566149 - gi\|148566149\|gb\|ABQ88424.1\| prophage repressor [Enterobacteria phage CUS-3] gi\|218352722, gi... - gi\|218695990\|ref\|YP_002403657.1\| Repressor protein CII [Escherichia coli 55989], gi\|218352722\|emb\|CA... gi\|117624572, gi... - gi\|117624572\|ref\|YP_853485.1\| putative phage repressor protein [Escherichia coli APEC O1], gi\|115513...	144.0	[0..1]	[212..1]
gi\|59712644, gi\|... - gi\|59712644\|ref\|YP_205420.1\| Cro/Cl family transcriptional regulator [Vibrio fischeri ES114], gi\|594...	143.0	[0..1]	[217..1]
LEXA_BACHD - LexA repressor OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-12... LEXA_BACHD - LexA repressor OS=Bacillus halodurans GN=lexA PE=3 SV=1	142.0	[0..1]	[216..1]
gi\|21914458 - gi\|21914458\|gb\|AAM81423.1\|AF527608_45 C2 protein [Bacteriophage P22-pbi]	141.0	[0..1]	[212..1]
gi\|133359 - sp\|P03035\|RPC2_BPP22 Repressor protein C2 gi\|1143409 - gi\|1143409\|emb\|CAA60873.1\| c2 [Salmonella typhimurium] gi\|168240083, gi... - gi\|205340367\|gb\|EDZ27131.1\| P22 repressor protein c2 [Salmonella enterica subsp. enterica serovar He... gi\|194410173, gi... - gi\|194451869\|ref\|YP_002044323.1\| P22 repressor protein c2 [Salmonella enterica subsp. enterica serov... gi\|58339111, gi\|... - gi\|62362268\|ref\|YP_224193.1\| gp55 [Enterobacteria phage ES18], gi\|58339111\|gb\|AAW70526.1\| gp55 [Salm... RPC2_BPP22 - Repressor protein C2 OS=Enterobacteria phage P22 GN=C2 PE=1 SV=1 gi\|1143409\|emb\|C... - c2 [Salmonella typhimurium]	141.0	[0..1]	[212..1]
gi\|63256755, gi\|... - gi\|66046048\|ref\|YP_235889.1\| peptidase [Pseudomonas syringae pv. syringae B728a], gi\|63256755\|gb\|AAY...	138.0	[0..1]	[214..1]
gi\|207088194 - gi\|207088194\|gb\|EDZ65466.1\| Peptidase S24-like domain protein [Nitrosococcus oceani AFC27] gi\|254435083, gi... - gi\|254435083\|ref\|ZP_05048590.1\| Peptidase S24-like domain protein [Nitrosococcus oceani AFC27], gi\|2... gi\|77164141, gi\|... - gi\|77164141\|ref\|YP_342666.1\| peptidase S24, S26A and S26B [Nitrosococcus oceani ATCC 19707], gi\|7688...	137.0	[0..3]	[213..4]
LEXA_BACSK - LexA repressor OS=Bacillus clausii (strain KSM-K16) GN=lexA PE=3 SV=1	136.0	[0..1]	[216..1]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTIHDIRRS NARKLRDGVG GNSSFATMID REPTQTSRFM GDGATKNIGD SMARHIEKCF  60
   61 DLPVGWLDQE HQTTNITKKP DVSITNKQIT LVPVISWVQA GAWKEVGYSE VDLSTAETYP 120
  121 CPVPCGEMTY ILRVIGDSMI DEYRPGDMIF VDPEVPACHG DDVIALMHDT GETTFKRLIE 180
  181 DGTQRYLKAL NPNWPEPYIK INGNCSIIGT VIFSGKPRRY KIKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.522879
Match:	1jhfA
Description:	LexA repressor, N-terminal DNA-binding domain; LexA C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits