YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPL10
Organism:	Homo sapiens
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL10.

Description	E-value	Query Range	Subject Range
gi\|74222644 - gi\|74222644\|dbj\|BAE42195.1\| unnamed protein product [Mus musculus]	6.0E-68	[1..261]	[1..262]
gi\|109491760, gi... - ref\|XP_213449.2\| similar to mitochondrial ribosomal protein L10 [Rattus norvegicus], gi\|157819877\|re...	9.0E-68	[1..261]	[1..262]
gi\|114666402 - gi\|114666402\|ref\|XP_001173485.1\| PREDICTED: mitochondrial ribosomal protein L10 isoform 4 [Pan trogl...	2.0E-63	[1..261]	[1..261]
MRPL10 - mitochondrial ribosomal protein L10 gi\|123995285, gi... - gi\|123995285\|gb\|ABM85244.1\| mitochondrial ribosomal protein L10 [synthetic construct], gi\|123980472\|...	6.0E-63	[1..261]	[1..261]
gi\|73966176 - gi\|73966176\|ref\|XP_850888.1\| PREDICTED: similar to mitochondrial ribosomal protein L10 isoform a [Ca...	4.0E-59	[1..261]	[1..262]
gi\|109114133 - gi\|109114133\|ref\|XP_001083768.1\| PREDICTED: similar to mitochondrial ribosomal protein L10 isoform a...	7.0E-58	[1..252]	[1..252]
mRpL10-PA - The gene mitochondrial ribosomal protein L10 is referred to in FlyBase by the symbol Dmel\mRpL10 (CG... gi\|220952988, gi... - gi\|220952988\|gb\|ACL89037.1\| mRpL10-PA [synthetic construct], gi\|220942770\|gb\|ACL83928.1\| mRpL10-PA [...	2.0E-55	[5..249]	[1..248]
RM10_DROPS - 39S ribosomal protein L10, mitochondrial precursor - Drosophila pseudoobscura (Fruit fly) RM10_DROPS - 39S ribosomal protein L10, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=mRpL10 PE=3 SV...	2.0E-52	[5..254]	[1..251]

Back

Predicted Domain #1

Region A:
Residues: [1-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAVAGMLR GGLLPQAGRL PTLQTVRYGS KAVTRHRRVM HFQRQKLMAV TEYIPPKPAI  60
   61 HPSCLPSPPS PPQEEIGLIR LLRREIAAVF QDNRMIAVCQ NVALSAEDKL LMRHQLRKHK 120
  121 ILMKVFPNQV LKPFLEDSKY QNLLPLFVGH NMLLVSEEPK VKEMVRILRT VPFLPLLGGC 180
  181 IDDTILSRQG FINYSKLPSL PLVQGELVGG LTCLTAQTHS LLQHQPLQLT TLLDQYIREQ 240
  241 REKDSVMSAN GKPDPDTVPD S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.045757
Match:	1zavA
Description:	Ribosomal Protein L10-L12(NTD) Complex, Space Group P21
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.21399440705185	bayes_pls_golite062009
structural molecule activity	8.64272477066313	bayes_pls_golite062009
binding	0.883379158418688	bayes_pls_golite062009
protein binding	0.184314459922274	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: