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View Structure Prediction Details

Protein: GET4
Organism: Homo sapiens
Length: 327 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GET4.

Description E-value Query
Range		 Subject
Range
gi|4680679 - gi|4680679|gb|AAD27729.1|AF132954_1 CGI-20 protein [Homo sapiens]
 0.0 [21..327] [14..320]
GET4_BOVIN - Golgi to ER traffic protein 4 homolog OS=Bos taurus GN=GET4 PE=2 SV=1
 0.0 [9..327] [8..325]
gi|109495321, gi... - gi|109496673|ref|XP_001074468.1| PREDICTED: similar to CG9853-PA [Rattus norvegicus], gi|109495321|r...
 0.0 [9..327] [89..407]
GET4_XENTR - Golgi to ER traffic protein 4 homolog OS=Xenopus tropicalis GN=get4 PE=2 SV=1
 0.0 [4..327] [2..325]
GET4B_XENLA - Golgi to ER traffic protein 4 homolog B OS=Xenopus laevis GN=get4-b PE=2 SV=1
 0.0 [4..327] [2..325]
GET4_MOUSE - Golgi to ER traffic protein 4 homolog OS=Mus musculus GN=Get4 PE=1 SV=2
 0.0 [9..327] [9..327]
GET4_CHICK - Golgi to ER traffic protein 4 homolog OS=Gallus gallus GN=GET4 PE=2 SV=1
 0.0 [1..327] [1..312]
gi|73958248 - gi|73958248|ref|XP_548720.2| PREDICTED: similar to CG9853-PA [Canis familiaris]
 0.0 [19..327] [52..335]

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Predicted Domain #1
Region A:
Residues: [1-327] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAAAMAEQ ESARNGGRNR GGVQRVEGKL RASVEKGDYY EAHQMYRTLF FRYMSQSKHT  60
   61 EARELMYSGA LLFFSHGQQN SAADLSMLVL ESLEKAEVEV ADELLENLAK VFSLMDPNSP 120
  121 ERVTFVSRAL KWSSGGSGKL GHPRLHQLLA LTLWKEQNYC ESRYHFLHSA DGEGCANMLV 180
  181 EYSTSRGFRS EVDMFVAQAV LQFLCLKNKS SASVVFTTYT QKHPSIEDGP PFVEPLLNFI 240
  241 WFLLLAVDGG KLTVFTVLCE QYQPSLRRDP MYNEYLDRIG QLFFGVPPKQ TSSYGGLLGN 300
  301 LLTSLMGSSE QEDGEESPSD GSPIELD

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.53
Match: 1qqeA
Description: Vesicular transport protein sec17
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 2.64850159998065 bayes_pls_golite062009
transcription regulator activity 1.96534484578496 bayes_pls_golite062009
nucleic acid binding 1.64804251600372 bayes_pls_golite062009
DNA binding 1.63530462331869 bayes_pls_golite062009
protein binding 1.51322932625387 bayes_pls_golite062009
transcription factor activity 0.941893540415683 bayes_pls_golite062009
transcription factor binding 0.370606597126089 bayes_pls_golite062009
transcription cofactor activity 0.0874081614883346 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle