YRC Public Data Repository - Protein Structure Prediction

Protein:	RAB27A
Organism:	Homo sapiens
Length:	221 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAB27A.

Description	E-value	Query Range	Subject Range
gi\|49074732, gi\|... - gi\|71019563\|ref\|XP_760012.1\| hypothetical protein UM03865.1 [Ustilago maydis 521], ref\|XP_401480.1\| ...	3.0E-57	[1..220]	[1..209]
rab-1 - RAS-related protein status:Confirmed UniProt:Q9UAQ6 protein_id:AAC69218.1	4.0E-56	[1..219]	[1..205]
CRE16067, FL81_1... - RP15185 WBGene00061078 locus:Cre-rab-1 status:Confirmed, null gi\|157761211 - gi\|157761211\|ref\|XP_001672948.1\| Hypothetical protein CBG01077 [Caenorhabditis briggsae AF16] gi\|39588485, gi\|... - gi\|39588485\|emb\|CAE58008.1\| Hypothetical protein CBG01077 [Caenorhabditis briggsae], gi\|187038224\|em...	4.0E-56	[1..219]	[1..205]
RB27A_PIG - Ras-related protein Rab-27A OS=Sus scrofa GN=RAB27A PE=2 SV=1	6.0E-56	[1..221]	[1..221]
gi\|452229 - gi\|452229\|dbj\|BAA04167.1\| low Mr GTP-binding protein [Rattus sp.] RB27A_RAT - Ras-related protein Rab-27A OS=Rattus norvegicus GN=Rab27a PE=1 SV=1	1.0E-55	[1..221]	[1..221]
gi\|421942, gi\|311907 - pir\|\|S34253 GTP-binding protein, ras-related - common tobacco, gi\|311907\|emb\|CAA51011.1\| ras-related...	2.0E-55	[3..220]	[2..202]
RAB27A - RAB27A, member RAS oncogene family	2.0E-55	[1..221]	[1..221]
CCDS10153.1_1 - null gi\|109081224, gi... - gi\|109081228\|ref\|XP_001089659.1\| PREDICTED: similar to Ras-related protein Rab-27A isoform 4 [Macaca...	2.0E-55	[1..221]	[1..221]
gi\|7643790 - gi\|7643790\|gb\|AAF65510.1\| small GTP-binding protein [Capsicum annuum]	2.0E-55	[3..220]	[2..202]

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Predicted Domain #1

Region A:
Residues: [1-221]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDGDYDYLI KFLALGDSGV GKTSVLYQYT DGKFNSKFIT TVGIDFREKR VVYRASGPDG  60
   61 ATGRGQRIHL QLWDTAGQER FRSLTTAFFR DAMGFLLLFD LTNEQSFLNV RNWISQLQMH 120
  121 AYCENPDIVL CGNKSDLEDQ RVVKEEEAIA LAEKYGIPYF ETSAANGTNI SQAIEMLLDL 180
  181 IMKRMERCVD KSWIPEGVVR SNGHASTDQL SEEKEKGACG C

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.045757
Match:	2iezA
Description:	No description for 2iezA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits