YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|94376213, gi\|...
Organism:	Mus musculus
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|94376213, gi|....

Description	E-value	Query Range	Subject Range
gi\|82896738, gi\|... - gi\|82896738\|ref\|XP_919253.1\| PREDICTED: similar to Cytokine-like protein 1 precursor (Protein C17) i...	237.0	[0..1]	[139..1]
gi\|109073704 - gi\|109073704\|ref\|XP_001094538.1\| PREDICTED: similar to Cytokine-like protein 1 precursor (Protein C1...	224.0	[0..18]	[138..15]
gi\|73951856 - gi\|73951856\|ref\|XP_853874.1\| PREDICTED: similar to Cytokine-like protein C17 precursor [Canis famili...	219.0	[0..18]	[138..14]
gi\|123979774, gi... - gi\|61358199\|gb\|AAX41524.1\| cytokine-like protein C17 [synthetic construct], gi\|60815734\|gb\|AAX36356.... CYTL1 - cytokine-like 1	218.0	[0..24]	[138..21]
gi\|61368339 - gi\|61368339\|gb\|AAX43157.1\| cytokine-like protein C17 [synthetic construct]	218.0	[0..24]	[138..21]
gi\|114593068 - gi\|114593068\|ref\|XP_001155365.1\| PREDICTED: similar to cytokine-like protein C17 isoform 2 [Pan trog...	217.0	[0..24]	[138..21]
gi\|197384591, gi... - gi\|62660613\|ref\|XP_573630.1\| PREDICTED: similar to Cytokine-like protein 1 precursor (Protein C17) [...	216.0	[0..23]	[139..21]
gi\|76620378 - gi\|76620378\|ref\|XP_581416.2\| PREDICTED: similar to Cytokine-like protein 1 precursor (Protein C17) [...	204.0	[0..30]	[139..28]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPKTLPLLL LLVVVVIAWP LAVQSAPPTC YSRMLTLSRE IMADFQSLQA SEPEDSCVRY  60
   61 LPRLYLDIHN YCVLAKLRDF VASPQCWKMA EVDTLKDRVR KLYTIMNSFC RRDLVFLSDD 120
  121 CSALEDPIPE ATGPPDWQS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.836	a.24.9	alpha-catenin/vinculin
View	Download	0.627	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like
View	Download	0.624	a.2.7	tRNA-binding arm
View	Download	0.619	a.24.9	alpha-catenin/vinculin
View	Download	0.566	f.1.5	Exotoxin A, middle domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits