| Protein: | yu-PC |
| Organism: | Drosophila melanogaster |
| Length: | 607 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for yu-PC.
| Description | E-value | Query Range |
Subject Range |
|
|
369.0 | [0..23] | [607..1] |
|
Region A: Residues: [1-203] |
1 11 21 31 41 51
| | | | | |
1 MTLPCRCCCC SGKVTIFQYS AKMVSGRPLL YLSLPGVAFI LGVFWFRRRY KNCLDKPDDE 60
61 DSSAINDSSI EPTVQARKAN GVLQNGKLPQ QSASKSMNIN GTLVNGSGSG SGSSSDEKDS 120
121 PTTMLYGKSA PIKIQSNGRT SNGKHQQQID SEILKSKIQD AEHKTLCSID EDFENLSSPR 180
181 DLPDSVNTRV SFYNRKATQK TVE
|
| Detection Method: |  |
| Confidence: | 8.69897 |
| Match: | 1x4nA |
| Description: | Solution structure of KH domain in FUSE binding protein 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.63535971389028 | bayes_pls_golite062009 |
| RNA binding | 1.16361089268969 | bayes_pls_golite062009 |
| nucleic acid binding | 0.711581767271173 | bayes_pls_golite062009 |
| protein binding | 0.427606060593007 | bayes_pls_golite062009 |
|
Region A: Residues: [204-378] |
1 11 21 31 41 51
| | | | | |
1 PVVIKATRTP KISPENSFLD TNYTNKECEQ NNNCEPKEEP SKKEADQEEL EQDQEQTVLK 60
61 EEVVDSNGNQ KRNVDAASPS LSICSVQSGD SGKGSSLPRS EATRVKTTYE FLFPISLIGH 120
121 LYGRKRAFIN QIKAKTLASV SVGKNPYSGK VRICTIEGTE SEIDAALAMI RQRLP
|
| Detection Method: | |
| Confidence: | 15.30103 |
| Match: | 1j4wA |
| Description: | Far upstream binding element, FBP, KH3 and KH4 domains |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.63535971389028 | bayes_pls_golite062009 |
| RNA binding | 1.16361089268969 | bayes_pls_golite062009 |
| nucleic acid binding | 0.711581767271173 | bayes_pls_golite062009 |
| protein binding | 0.427606060593007 | bayes_pls_golite062009 |
|
Region A: Residues: [379-607] |
1 11 21 31 41 51
| | | | | |
1 AKRYPNFTMQ RIHFALPQTI VPLSTESLYN LQLKLIEGIN NDVVVSAVLS GSHIFIQHPL 60
61 HPSHPSLPLL QKQLYDSYST MEAPLLPSLE LSAVCVIPIN DVWYRVQIVD TDPEDEERCV 120
121 IKFLDFGGYM NVGFNTLRQI RTDFMNVPFQ STECILSNIE PIGGTWSIEA AEILNKLTKG 180
181 IVLQAQVAGY NSHNLPEIFL FASLGPNNVI FINKELVGRK LAKWVEMSD
|
| Detection Method: | |
| Confidence: | 30.69897 |
| Match: | 2o4xA |
| Description: | No description for 2o4xA was found. |
