| Protein: | pita-PB |
| Organism: | Drosophila melanogaster |
| Length: | 623 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pita-PB.
| Description | E-value | Query Range |
Subject Range |
|
|
769.0 | [0..2] | [623..612] |
|
Region A: Residues: [1-68] |
1 11 21 31 41 51
| | | | | |
1 MPGHICLECR LLFEHCYRFK QMCKRAETLL RQYPLTGNWP SPLEKPRAPM TMVASKKLLV 60
61 VPAKTAEP
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [69-132] |
1 11 21 31 41 51
| | | | | |
1 SETPKKLLNT MAKSSSQVII EDVQVLESAM VTPRTVAGSS PVPRRSHAYE LKVDNNQELS 60
61 MDDV
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [133-376] |
1 11 21 31 41 51
| | | | | |
1 QSMLEDMASE LEKEFPDIPQ KASPVKPKVL NKSSIRILNK GPAAPVEPRL ATPKVKRDDS 60
61 GNVAIVTEVL DSDLPLDDQD DPTKNAEKVA TDVFPCPDCE RSFPLQQLLE IHRLNHTRSR 120
121 SFQCLLCEKS FFSKYDLAKH NFVHTGERPF KCAICSKAFT RKALLHRHER THTDVPKFIC 180
181 VYCEKPFLSR QEMEKHAERH QKKRPFQCGV CTKSFAFKQG LERHETVHST NLPFPCQHCE 240
241 RSFS
|
| Detection Method: | |
| Confidence: | 62.221849 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
|
Region A: Residues: [377-434] |
1 11 21 31 41 51
| | | | | |
1 TASKLARHLV AHAGKRAYPC KYCHKSYMLS HHLSRHLRTH TQTSDASFVC SECKVSYS
|
| Detection Method: | |
| Confidence: | 4.78 |
| Match: | 1g2fC |
| Description: | TATA box-binding zinc finger, TATAZF |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [435-568] |
1 11 21 31 41 51
| | | | | |
1 NYNDLLDHAL IHATASLKCP MCRKQIEDID SVESHMDQHK QSERHACEFC DHIFLTQKCL 60
61 QRHIEDDHVV EMEPYQNEFE DDGEGEGGVD EKEEHLDDFE DMDNVKQEEF VTEYLEDDAL 120
121 YEDHLDDSDE SFTP
|
| Detection Method: | |
| Confidence: | 20.154902 |
| Match: | 1tf6A |
| Description: | Transcription factor IIIA, TFIIIA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.70988788192472 | bayes_pls_golite062009 |
| nucleic acid binding | 4.58713908116892 | bayes_pls_golite062009 |
| DNA binding | 4.56219307357342 | bayes_pls_golite062009 |
| transcription factor activity | 3.50954949535763 | bayes_pls_golite062009 |
| transcription repressor activity | 3.27542149084008 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.22082323675675 | bayes_pls_golite062009 |
| binding | 3.10743787485868 | bayes_pls_golite062009 |
| transcription activator activity | 2.19952417915035 | bayes_pls_golite062009 |
| chromatin binding | 2.18464662431232 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.63161912031789 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.48624530884061 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.42975942698743 | bayes_pls_golite062009 |
| transcription factor binding | 1.39608963544799 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.34049786451995 | bayes_pls_golite062009 |
| double-stranded DNA binding | 1.18599503594288 | bayes_pls_golite062009 |
| protein binding | 1.00484935878505 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.77874411480713 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.311339098303136 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
|
Region A: Residues: [569-623] |
1 11 21 31 41 51
| | | | | |
1 PPPKQRKTNP PKDAQQSVRQ TRSRDAQRIT QKTGKNEGKP HHKLERNLKN RRSAK
|
| Detection Method: | |
| Confidence: | 20.39794 |
| Match: | 1ubdC |
| Description: | Ying-yang 1 (yy1, zinc finger domain) |
Matching Structure (courtesy of the PDB): |
|
